Gene Pmen_2214 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPmen_2214 
Symbol 
ID5109159 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas mendocina ymp 
KingdomBacteria 
Replicon accessionNC_009439 
Strand
Start bp2449480 
End bp2450802 
Gene Length1323 bp 
Protein Length440 aa 
Translation table11 
GC content56% 
IMG OID640503458 
Productouter membrane porin 
Protein accessionYP_001187706 
Protein GI146307241 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.0154417 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones44 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAACAACA AGGCCCTATT TGGACTTTCT CTAATCGCTC TAAGTGTCAG CACCGGACAA 
GCAATGGCCG CCGGCGAGAA AGGCGAGGGA TTTATCGAAG GCAGTAGCCT GACCATTCTC
AATCGAAACC TCTACTTCAA CCGTGATTTC CGCAAAGGCC AGTCCAGTAG CTCAGGTAAC
GGCTACTCGG AAGAGTGGGC GCATGGCGTG ATCGGCCGAT TCGAGTCTGG CTACACCGAA
GGCACCGTAG GCTTTGGTGT CGATGCCTTT GCAATGCTGG GACTCAAGCT GGACACAGGC
GACGGTCGAT CTGGTGCAGG CGGCTCAGTC GATGTGATGC CGTATAACAG CCTCGGGCAG
GCTGAGGACA ACTACTCCAA GCTGGGCGGT GCAGTAAAAA CACGGTTCAT GGATACCGAA
ATCAAGGCAG GCGATGTCTT TCCTGTCAGC CCGGTCGTCC AGTACGGTGA TGCGCGGCTT
TTACCGGAGA GTTTCCGCGG CATCACCGTG GCCAACACCA GTGTGGAAGG ACTGTCGCTT
CAAGGCGGTC GCCTTCACTC GATGAGCCAG CCCAACAGCA GCAGCATGCG TGACGGCTTC
GCCACCTTCT ACGCGGGCGA AGTCGACTCT CCATGGATCG CCTATTTCGG CGGTGACTAC
ACGCTCAACG ACAACCTGGG CTTCAGTCTC TACACCAGTC GGCTCAAGGA TGCCTGGAAC
CAATACTATG CGGGCACCAC GCTGAGCTAT CCGCTTGCGG ACGATGTCGC CTTGATCGGT
GGGCTGAACT ACTACAAGGC GGTTGATGAA GGGAAGCAGC TCCTCGGGAG CTTCGATAAC
AACATCTGGA GCGGTAGGGT CGGCATCCAG TTCGGCGCGC ACACCGTCCT GGTTGGACTC
CAGCGCAACA ACGGCGATGA CGACTTCGAC TACTTGCGCC AATCGGACTC CATCTACCTC
GACAACTCCA TTCAGTACAG TGACTTCAAC TCTCCCAAGG AGAAGTCATG GCAGGTGCGC
TATGACCTGG ATATGGAGCC TTTCGGTGTG CCCGGATTGA GCTTCATGAC TCGATATGCT
CAGGGCTGGG ATGCCGACTA CAGCAACGCA AACGAGGTCT ACATGCGCCG AGATGACAAT
GGCGATCCGT TGACCAACCA GAAGCGCTGG GAACGTGACA TCGAGGCCAA GTACGTTGTG
CAGTCTGGAT CGCTGAAGAA CATGTCCTTT CGCATTCGAC AAGCCACGAC TCGCGCCACC
GACTTCGAGT CGGATTTGGA TGAGTTCCGC CTGATTGTCG AGTACCCGCT GGAAGTTCTC
TAA
 
Protein sequence
MNNKALFGLS LIALSVSTGQ AMAAGEKGEG FIEGSSLTIL NRNLYFNRDF RKGQSSSSGN 
GYSEEWAHGV IGRFESGYTE GTVGFGVDAF AMLGLKLDTG DGRSGAGGSV DVMPYNSLGQ
AEDNYSKLGG AVKTRFMDTE IKAGDVFPVS PVVQYGDARL LPESFRGITV ANTSVEGLSL
QGGRLHSMSQ PNSSSMRDGF ATFYAGEVDS PWIAYFGGDY TLNDNLGFSL YTSRLKDAWN
QYYAGTTLSY PLADDVALIG GLNYYKAVDE GKQLLGSFDN NIWSGRVGIQ FGAHTVLVGL
QRNNGDDDFD YLRQSDSIYL DNSIQYSDFN SPKEKSWQVR YDLDMEPFGV PGLSFMTRYA
QGWDADYSNA NEVYMRRDDN GDPLTNQKRW ERDIEAKYVV QSGSLKNMSF RIRQATTRAT
DFESDLDEFR LIVEYPLEVL