Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pmen_2214 |
Symbol | |
ID | 5109159 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas mendocina ymp |
Kingdom | Bacteria |
Replicon accession | NC_009439 |
Strand | + |
Start bp | 2449480 |
End bp | 2450802 |
Gene Length | 1323 bp |
Protein Length | 440 aa |
Translation table | 11 |
GC content | 56% |
IMG OID | 640503458 |
Product | outer membrane porin |
Protein accession | YP_001187706 |
Protein GI | 146307241 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.0154417 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 44 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAACAACA AGGCCCTATT TGGACTTTCT CTAATCGCTC TAAGTGTCAG CACCGGACAA GCAATGGCCG CCGGCGAGAA AGGCGAGGGA TTTATCGAAG GCAGTAGCCT GACCATTCTC AATCGAAACC TCTACTTCAA CCGTGATTTC CGCAAAGGCC AGTCCAGTAG CTCAGGTAAC GGCTACTCGG AAGAGTGGGC GCATGGCGTG ATCGGCCGAT TCGAGTCTGG CTACACCGAA GGCACCGTAG GCTTTGGTGT CGATGCCTTT GCAATGCTGG GACTCAAGCT GGACACAGGC GACGGTCGAT CTGGTGCAGG CGGCTCAGTC GATGTGATGC CGTATAACAG CCTCGGGCAG GCTGAGGACA ACTACTCCAA GCTGGGCGGT GCAGTAAAAA CACGGTTCAT GGATACCGAA ATCAAGGCAG GCGATGTCTT TCCTGTCAGC CCGGTCGTCC AGTACGGTGA TGCGCGGCTT TTACCGGAGA GTTTCCGCGG CATCACCGTG GCCAACACCA GTGTGGAAGG ACTGTCGCTT CAAGGCGGTC GCCTTCACTC GATGAGCCAG CCCAACAGCA GCAGCATGCG TGACGGCTTC GCCACCTTCT ACGCGGGCGA AGTCGACTCT CCATGGATCG CCTATTTCGG CGGTGACTAC ACGCTCAACG ACAACCTGGG CTTCAGTCTC TACACCAGTC GGCTCAAGGA TGCCTGGAAC CAATACTATG CGGGCACCAC GCTGAGCTAT CCGCTTGCGG ACGATGTCGC CTTGATCGGT GGGCTGAACT ACTACAAGGC GGTTGATGAA GGGAAGCAGC TCCTCGGGAG CTTCGATAAC AACATCTGGA GCGGTAGGGT CGGCATCCAG TTCGGCGCGC ACACCGTCCT GGTTGGACTC CAGCGCAACA ACGGCGATGA CGACTTCGAC TACTTGCGCC AATCGGACTC CATCTACCTC GACAACTCCA TTCAGTACAG TGACTTCAAC TCTCCCAAGG AGAAGTCATG GCAGGTGCGC TATGACCTGG ATATGGAGCC TTTCGGTGTG CCCGGATTGA GCTTCATGAC TCGATATGCT CAGGGCTGGG ATGCCGACTA CAGCAACGCA AACGAGGTCT ACATGCGCCG AGATGACAAT GGCGATCCGT TGACCAACCA GAAGCGCTGG GAACGTGACA TCGAGGCCAA GTACGTTGTG CAGTCTGGAT CGCTGAAGAA CATGTCCTTT CGCATTCGAC AAGCCACGAC TCGCGCCACC GACTTCGAGT CGGATTTGGA TGAGTTCCGC CTGATTGTCG AGTACCCGCT GGAAGTTCTC TAA
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Protein sequence | MNNKALFGLS LIALSVSTGQ AMAAGEKGEG FIEGSSLTIL NRNLYFNRDF RKGQSSSSGN GYSEEWAHGV IGRFESGYTE GTVGFGVDAF AMLGLKLDTG DGRSGAGGSV DVMPYNSLGQ AEDNYSKLGG AVKTRFMDTE IKAGDVFPVS PVVQYGDARL LPESFRGITV ANTSVEGLSL QGGRLHSMSQ PNSSSMRDGF ATFYAGEVDS PWIAYFGGDY TLNDNLGFSL YTSRLKDAWN QYYAGTTLSY PLADDVALIG GLNYYKAVDE GKQLLGSFDN NIWSGRVGIQ FGAHTVLVGL QRNNGDDDFD YLRQSDSIYL DNSIQYSDFN SPKEKSWQVR YDLDMEPFGV PGLSFMTRYA QGWDADYSNA NEVYMRRDDN GDPLTNQKRW ERDIEAKYVV QSGSLKNMSF RIRQATTRAT DFESDLDEFR LIVEYPLEVL
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