Gene Pmen_2094 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPmen_2094 
Symbol 
ID5109828 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas mendocina ymp 
KingdomBacteria 
Replicon accessionNC_009439 
Strand
Start bp2319795 
End bp2322512 
Gene Length2718 bp 
Protein Length905 aa 
Translation table11 
GC content69% 
IMG OID640503338 
Productassimilatory nitrate reductase (NADH) alpha subunit apoprotein 
Protein accessionYP_001187587 
Protein GI146307122 
COG category[R] General function prediction only 
COG ID[COG3383] Uncharacterized anaerobic dehydrogenase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0428437 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones30 
Fosmid unclonability p-value0.0964557 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCTACCC AGAGCCAAAT CACCGCTTCA ACCTGCTGCT ACTGCGGCGT GGGCTGCGGC 
GTGCTGATCG AGCACGACGG CGAGAAGATC CTCGGCGTCG CCGGCGACCC CAGCCACCCG
GCCAACTTCG GCAAGCTGTG CAGCAAGGGC TCGACCCTGC ACCTGACCGG CGACCTCGAC
GCCCGCGCCC TCCATCCCGA GCTGCGTCTG GGCAAGGGCC TGGCCCGTTC GCGCACCGAC
TGGGACAGCG CCCTGGATCA CGCCGCGGCG GTGTTCGCCG AGACCATCCG CGAGCACGGC
CCGGACAGCG TGGCCTTTTA TATCTCCGGC CAGTTGCTGA CCGAGGACTA CTACGCCTTC
AACAAGCTGG CCAGAGCATT GGTGGGAACC AACAATATCG ACAGCAATTC GCGCCTGTGC
ATGAGCTCGG CGGTGGTCGG CTACAAGCGC AGCCTCGGCG CCGATGCCCC CCCCTGCAGT
TACGAGGACA TCGAGCAGAG CGACTGCCTG CTGATCGCCG GCTCCAACAT GGCCTACGCC
CATCCGGTAC TGTTCCGCCG CCTGGAAGAA GCCAAGGCCC GCCGTCCGGA GATGCAGATC
ATCGTCGTCG ATCCGCGGCG TACCGACACC TGCGAGCTGG CCGACCTGCA CCTGGCGATC
CTGCCCGGCA CCGACGTCGC GCTGTTTCAC GGCATCCTGC ATATCCTGCT GTGGGAAGGC
TGGGTCGACC GCCGCTACAT CGACGCCCAC ACCGAAGGCT TCGCGGCGCT GAAGAACCTG
GTGCGCGACT ACAGCCCGGC GGCCACTGCC GATATCTGCG GCATCAGCCT GGACGCCCTG
CAGCGCTGCG CCGAGTTGAT CGGCCGTGCG CCCTCCTTCC TTTCGCTGTG GTGCATGGGG
CTGAACCAGT CCAGCGCAGG CAGTGCGAAG AACAGCGCGC TGATCAACCT GCACCTGGCC
ACCGGGCAGA TCGGCAAGCC CGGCGCCGGC CCCTTCTCGC TGACCGGCCA GCCCAATGCC
ATGGGCGGTC GCGAGACCGG CAGCCTGAGC AACCTGCTGC CGGGCCACCG CGAGGCCGGC
AACGCCGAGC ACCGCGCCGA AGTCGCCGCC TACTGGGGCG TCGATGCCCT GCCGGAGACG
CCCGGTCTGT CCGCCATCGA GCTGTTCGAT GCGGTGCACG ACGGGCGCAT CAAGGCGCTG
TGGATCGCCT GCACCAACCC GGCGCAGTCC CTGCCGAACC AGAACAAGGT GCACGAGGCC
CTGGCCGCCT GCCCCTTCGT CGTGGTGCAG GAAGCCTTCT TCACCACCGA GACCTGCCGC
TACGCCGACC TGCTGCTGCC CGCCGCCAGC TGGGGCGAGA AGGAAGGCAC GGTGACCAAC
TCCGAACGAC GCGTCAGCCA TGTGCGCCGC GCCGTGCCAG CGCCCGCAGA GGCGCGGTCC
GATTGGTCGA TCACCTGCGA CTTCGCCCGT CGCCTGGAAA CTCTGCTCCG CCCCGGCCTG
CCCAGCCTGT TCGACTTCAC CAGCAGCGAG GCGCTGTTCG AGGAATACAA GCACCTGACC
GCCGAGCGCG ATCTCGACCT CTCGGGGCTG AGCTACGCGC TGCTCGATGA CCAAGGTCCC
CAGCAATGGC CGTTTGCGCC GGGCGCACGC CAGGGTACCG CACGGCTCTA TGCCGACGGC
CTCTTCCCCA CCGCCAGCGG ACGCGCGCAG TTCCATGCCG ACCCGTACCG CGCGCCGAAG
GAAAAGCGTG AGGCGCGCTA TTCGCTCACC CTCAATACCG GCCGCCTGCG CGACCAGTGG
CACGGCATGA GCCGCACCGG CACCGCGGCG CGCCTGTTCG GCCATGTCGA GGCCGCCGTG
CTCGGTCTGC ACCCGGACGA GCTGCGTCGC CGTCGTCTGC AGGACGGCGA TCTGGTCAAG
TTGCGCAGCC GCCGCGGCAG TCTGATCCTG CCGGTGCAGG CGGACGAGTC GGTGCGCCCA
GGCCAGGCCT GGCTGCCGAT GCACTGGGGC GACCGCTTCC TCAAGGGCTT GGGCACCAAC
GTGCTGACCC AACCGGCCTT CGACCCGCTA TCCAAGCAGC CGGAGCTCAA GCATGCCGGC
GTCGAGGTGG ATAAGGTCGA GCTGCCCTGG CAGCTGTTCG CCCTGGTCGA GGGCGAGGTG
CAGAGCCGCT TCGAGGCCCT GCGTCCGCTG TTCGAGGAGT TCGCCTACGC CAGCCTCACC
CCCACCGGCC GCGAGCGCCC CGCCCTGCTG ATCCGCGCCG CCAGCGCCGT GGCGCCGCAA
CCCGAACTGC TGGCACAGAT CGACCGCCTG CTGCGCCTGA ACCAGGGCCC GGTGCTGGCC
TACGACGACC CGCGCCGCGC GGTGGGCAAG CGCGTGCGCA TTGAGGATGG CCGCATCGTC
AGTACCCGTC TGGCCGGCGA AACGGCCGCC AGCGAATGGC TCAGAAGCCT GTGGCTTGAC
GGCCAGGCCG ATGCCGACCT GCGCCGCTGG CTGCTCGCCC CGGTCTCCGC GCCGCCGGGC
AATGCAACCG CCACCACCCG CGGCAAGACC CTGTGCAATT GCCTGAACGT CAGCGAAAGC
GCGGTGTGCG CCGGCATCGA GCGTGGCCTG GATCTGAACG GCCTCAAGCA GGAACTCAAA
TGCGGCACCA GTTGTGGCTC CTGCGTACCC GAAATCAAGC GATTGCTGGC TCAACAGCCG
ATGGCGACAC AAGCGTAG
 
Protein sequence
MPTQSQITAS TCCYCGVGCG VLIEHDGEKI LGVAGDPSHP ANFGKLCSKG STLHLTGDLD 
ARALHPELRL GKGLARSRTD WDSALDHAAA VFAETIREHG PDSVAFYISG QLLTEDYYAF
NKLARALVGT NNIDSNSRLC MSSAVVGYKR SLGADAPPCS YEDIEQSDCL LIAGSNMAYA
HPVLFRRLEE AKARRPEMQI IVVDPRRTDT CELADLHLAI LPGTDVALFH GILHILLWEG
WVDRRYIDAH TEGFAALKNL VRDYSPAATA DICGISLDAL QRCAELIGRA PSFLSLWCMG
LNQSSAGSAK NSALINLHLA TGQIGKPGAG PFSLTGQPNA MGGRETGSLS NLLPGHREAG
NAEHRAEVAA YWGVDALPET PGLSAIELFD AVHDGRIKAL WIACTNPAQS LPNQNKVHEA
LAACPFVVVQ EAFFTTETCR YADLLLPAAS WGEKEGTVTN SERRVSHVRR AVPAPAEARS
DWSITCDFAR RLETLLRPGL PSLFDFTSSE ALFEEYKHLT AERDLDLSGL SYALLDDQGP
QQWPFAPGAR QGTARLYADG LFPTASGRAQ FHADPYRAPK EKREARYSLT LNTGRLRDQW
HGMSRTGTAA RLFGHVEAAV LGLHPDELRR RRLQDGDLVK LRSRRGSLIL PVQADESVRP
GQAWLPMHWG DRFLKGLGTN VLTQPAFDPL SKQPELKHAG VEVDKVELPW QLFALVEGEV
QSRFEALRPL FEEFAYASLT PTGRERPALL IRAASAVAPQ PELLAQIDRL LRLNQGPVLA
YDDPRRAVGK RVRIEDGRIV STRLAGETAA SEWLRSLWLD GQADADLRRW LLAPVSAPPG
NATATTRGKT LCNCLNVSES AVCAGIERGL DLNGLKQELK CGTSCGSCVP EIKRLLAQQP
MATQA