Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pmen_2066 |
Symbol | rnhA |
ID | 5109800 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas mendocina ymp |
Kingdom | Bacteria |
Replicon accession | NC_009439 |
Strand | + |
Start bp | 2288235 |
End bp | 2288687 |
Gene Length | 453 bp |
Protein Length | 150 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 640503310 |
Product | ribonuclease H |
Protein accession | YP_001187559 |
Protein GI | 146307094 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0328] Ribonuclease HI |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 0.043986 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 31 |
Fosmid unclonability p-value | 0.0759815 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGTCTGAAA CCGATGAAGT GGTGATCTAC ACCGACGGCG CCTGCAAGGG CAATCCCGGC CCCGGAGGCT GGGGGGCGTT GCTGGTCTAC AAGGGCGTGG AAAAGGAGTT GTGGGGCGGG GACCCCAGCA CCACCAACAA CCGCATGGAG CTGATGGCGG CGATTGCCGG CCTGATCGCC CTGACCCGGC CCTGCTCGGT CAAGCTGGTG ACCGATTCGC AATATGTGAT GAAGGGCATC CAGGAATGGC TGCCGAACTG GAAGAAGCGC GGCTGGAAGA CCGCCTCGAA AGAGCCGGTG AAGAATGCCG ACCTCTGGCA GAAGCTGGAT GAAGAGGTCA ACCGTCATCA GGTCAGTTGG CAGTGGGTGC GTGGGCACAC CGGCCATCCG GGCAACGAGC GCGCCGATCA GCTGGCCAAC CGTGGCGTCG ACGAGGTGCG CTCGGCGCGC TGA
|
Protein sequence | MSETDEVVIY TDGACKGNPG PGGWGALLVY KGVEKELWGG DPSTTNNRME LMAAIAGLIA LTRPCSVKLV TDSQYVMKGI QEWLPNWKKR GWKTASKEPV KNADLWQKLD EEVNRHQVSW QWVRGHTGHP GNERADQLAN RGVDEVRSAR
|
| |