Gene Pmen_2039 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPmen_2039 
Symbol 
ID5109773 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas mendocina ymp 
KingdomBacteria 
Replicon accessionNC_009439 
Strand
Start bp2253658 
End bp2254095 
Gene Length438 bp 
Protein Length145 aa 
Translation table11 
GC content64% 
IMG OID640503280 
ProductAsnC family transcriptional regulator 
Protein accessionYP_001187532 
Protein GI146307067 
COG category[K] Transcription 
COG ID[COG1522] Transcriptional regulators 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones26 
Plasmid unclonability p-value0.480764 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones39 
Fosmid unclonability p-value0.558444 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACCGATG AAATCGACCA GACCCTGATC GCCGCCCTGA TGGAAGACTC GCGGCGCTCC 
CTGAAGGCCC TGGCGCAGAT CAGTGGCCTG TCCTCACCCA GCGTGGCCGA GCGCCTGCGG
CGTCTGGAAG AACGCGGCGT GCTCAAGGGT TACAGAGTGG AAATCGATCC AAGCCACTTC
GGCTATCAGC TGCAGGCCAT CGTTCGCGTG CGTCCGCTGC CCGGCAAGCT GCACGAGGTG
GAACGGCTGA TCCAGGCCAC GCCCGAGTTC ACCGAATGCG ACAAGGTCAC CGGCGAGGAC
TGCTTCATCG CCCGTCTGCA CGTGCGCTCG ATGGAGCAAC TGGACGAGGT GCTCGACCGC
ATCAACGGCC ATGCCGAAAC CAACACCGCC ATCGTCAAGA AGACCTCGGT GCCCCGCCGC
CTGCCCCCGA TGAACTGA
 
Protein sequence
MTDEIDQTLI AALMEDSRRS LKALAQISGL SSPSVAERLR RLEERGVLKG YRVEIDPSHF 
GYQLQAIVRV RPLPGKLHEV ERLIQATPEF TECDKVTGED CFIARLHVRS MEQLDEVLDR
INGHAETNTA IVKKTSVPRR LPPMN