| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_2029 |
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| Symbol | |
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| ID | 5109920 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | - |
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| Start bp | 2241842 |
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| End bp | 2242741 |
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| Gene Length | 900 bp |
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| Protein Length | 299 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 640503270 |
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| Product | hydroxymethylglutaryl-CoA lyase |
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| Protein accession | YP_001187522 |
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| Protein GI | 146307057 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0119] Isopropylmalate/homocitrate/citramalate synthases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.0062803 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 39 |
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| Fosmid unclonability p-value | 0.740342 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCCTGC CCAAATCCGT ACGCCTGGTC GAAGTCGGCC CGCGCGACGG CCTGCAGAAC
GAGAAACAGC CGATCAGCGT CGCCGACAAG GTGCGCCTGG TCGACGACCT GAGCGCCGCC
GGCCTCGGCT ATGTCGAGGT CGGCAGTTTC GTCTCGCCCA AGTGGGTACC GCAGATGGCC
GGCTCCGCCG AGGTGTTCGC CGCCATCCAG CGCCAGCCGG GCGTCACCTA CGCCGCGCTG
ACACCGAACC TGAAAGGCTT CGAGGCCGCC CTGCAGGCCG AGGTCGAGGA AGTGGCGGTA
TTCGCTGCCG CCAGCGAGGC CTTTTCGCAG AAGAACATCA ACTGCTCCAT CGCCGAGAGC
CTGGCGCGCT TCGTGCCGCT GATGGAGGCG GCCAAGGCCG CCAAGGTGCG CGTGCGCGGC
TATGTGTCCT GCGTGCTCGG CTGCCCCTAC GACGGCGAGA TCGACCCGGC CCAGGTCGCC
AGCGTCGCTC GCGAGCTGTA CGCCATGGGC TGCTACGAGG TATCGCTCGG CGACACCATC
GGCACCGGCA CGCCGGGCAA GACCCGCCAC CTGATCAACG TGGTCGGCCG CGACATCCCC
CGCCACCTGC TGGCCGGGCA TTTCCACGAC ACCTACGGCC AGGCGCTGGC CAATATCTAC
GCCAGCCTGC AGGAAGGCAT CCAGGTGTTC GACAGCTCGG TCGCCGGGCT CGGCGGCTGC
CCCTATGCCA AGGGCGCCAC CGGCAACGTC GCCACCGAGG ACGTGCTGTA CATGCTGCAA
GGTCTGGGCA TCGACACCGG CATCGACATG GACAAGCTGA TCGCCGCCGG CCAGCGCATC
TGCGAGGTGC TGGGCAAGGC CAATGGCTCG CGAGTGGCAC GCGCACGCCT GAGCCAGTAA
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| Protein sequence | MSLPKSVRLV EVGPRDGLQN EKQPISVADK VRLVDDLSAA GLGYVEVGSF VSPKWVPQMA
GSAEVFAAIQ RQPGVTYAAL TPNLKGFEAA LQAEVEEVAV FAAASEAFSQ KNINCSIAES
LARFVPLMEA AKAAKVRVRG YVSCVLGCPY DGEIDPAQVA SVARELYAMG CYEVSLGDTI
GTGTPGKTRH LINVVGRDIP RHLLAGHFHD TYGQALANIY ASLQEGIQVF DSSVAGLGGC
PYAKGATGNV ATEDVLYMLQ GLGIDTGIDM DKLIAAGQRI CEVLGKANGS RVARARLSQ
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