| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_1963 |
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| Symbol | |
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| ID | 5109854 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | + |
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| Start bp | 2159874 |
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| End bp | 2161649 |
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| Gene Length | 1776 bp |
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| Protein Length | 591 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 640503197 |
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| Product | Pyrrolo-quinoline quinone |
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| Protein accession | YP_001187456 |
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| Protein GI | 146306991 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG4993] Glucose dehydrogenase |
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| TIGRFAM ID | [TIGR03075] PQQ-dependent dehydrogenase, methanol/ethanol family |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.0160229 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 34 |
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| Fosmid unclonability p-value | 0.256272 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAACACG CCGGTCTTCG CCAGCCTTTC CTCCTCACCG CACTCTGTGC CGCCATGCTG
TTGCCGTCCG CCGCCGCGCT GGCGGTCACC GACGCCGAGA TTCTCAAGGA CGCCACCACC
ACCAACGAGA TCGTCACCAA CGGCCTCGGT CTGCAGGGCC AGCGCTACAG CCCGCTGAAC
ATCCTCAACG ATCAGAACGT CAAGGAGCTG CGCCCGGTCT GGACCATGTC CTTCGGCGGT
GAGAAGCAGC GCGGCCAGCA GGCGCAGCCG CTGATCAAGG ACGGCGTTAT GTACGTCACC
GCCTCCTATT CGCGGGTGTT CGCCGTCGAT GCGCGCACCG GGCGTGAGCT GTGGCAGTAC
GAAGCCCGCT TGCCGGACGA CATTCGCCCT TGCTGCGACG TGATCAACCG TGGTGTCGCC
CTGTACGACG ATCTGGTGAT CTTCGGCACC CTGGACGCCA AGCTGGTGGC GCTGAACAAG
GACAGCGGCA AGGTGGTGTG GAGCAAGCGC GTGGCTGATC ACAAGGCCGG TTATTCGATC
ACCGCCGCGC CGCTGGTGGT GGGTGGCAAG CTGATCACCG GCGTCTCCGG TGGCGAGTTC
GGCGTGGTCG GCAAGATCGA AGCCTATGAC CCGAAGAATG GCGACCTGCT GTGGAGTCGT
CCGACCGTCG AAGGCCACAT GGGCTACGTC TACAAGGACG GCAAGGCCGT CGAGAACGGT
ATCAGCGGCG GCGAGGCCGG CAAGACCTGG CCGGGCGACC TGTGGAAGAC CGGCGGTGCC
GCGCCCTGGC TGGGCGGCTA CTACGACGCC GACACCAACC TGCTGTTCTT CGGCACTGGC
AACCCGGCGC CGTGGAACTC GCACCTGCGC CCGGGTGACA ACCTCTACTC GTCCTCGCGC
CTCGCCCTGA ACCCGGACGA TGGCAGCATC AAGTGGCACT TCCAGACCAC CCCGCACGAC
GGCTGGGACT TCGACGGCGT CAACGAGCTG GTCTCCTTCG ACTATCAGGA AGGCGGCAAG
ACCATCAAGG CGGCGGCCAC CGCTGACCGT AACGGCTTCT TCTACGTGCT TGACCGCACC
AACGGCAAGT TCATCCGCGG TTTCCCCTTC GTCGACAAGA TCACCTGGGC CAAGGGCCTG
GACAAGAACG GCCGGCCGAT CTACGACGAC AGCAACCGCC CGGGTTCGCC GAGTGCGGCA
GAGAAGGGCA AGAGCGTGTT CGCCGCGCCG GCTTTCCTCG GCGCGAAGAA CTGGATGCCC
ATGGCCTACA GCCAGGACAC CGGCCTGTTC TATGTGCCGT CCAACGAATG GGGCATGGAC
ATCTGGAACG AGGACATCGC CTACAAGAAG GGCGCGGCCT ACCTGGGCGC CGGCTTCACC
ATCAAGCCGC TGAACGAGGA CTACATCGGT GTGCTGCGTG CCATCGATCC GAAGACCGGC
AAGGAAGTCT GGCGCCACAA GAACTACGCG CCGCTGTGGG GCGGGGTACT GACCACCAAG
GGCAACCTGG TGTTCACCGG TAACCCGGAA GGCTACCTGC AGGCGTTCAA CGCCAAGACC
GGCGAGAAGG TCTGGGAATT CCAGACCGGC TCGGGCGTGA TCGGCTCGCC CGTGACTTGG
GAGATGGACG GCGAGCAGTA CGTCTCGGTG CTCTCCGGCT GGGGTGGTGC GGTACCGCTG
TGGGGCGGCG AGGTGGCCAA ACGCGTCAAG CACCTGAACC AGGGCGGCAT GCTGTGGACT
TTCAAGCTGC CGAAGGAGCT GGTCGCCAAG CGCTGA
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| Protein sequence | MKHAGLRQPF LLTALCAAML LPSAAALAVT DAEILKDATT TNEIVTNGLG LQGQRYSPLN
ILNDQNVKEL RPVWTMSFGG EKQRGQQAQP LIKDGVMYVT ASYSRVFAVD ARTGRELWQY
EARLPDDIRP CCDVINRGVA LYDDLVIFGT LDAKLVALNK DSGKVVWSKR VADHKAGYSI
TAAPLVVGGK LITGVSGGEF GVVGKIEAYD PKNGDLLWSR PTVEGHMGYV YKDGKAVENG
ISGGEAGKTW PGDLWKTGGA APWLGGYYDA DTNLLFFGTG NPAPWNSHLR PGDNLYSSSR
LALNPDDGSI KWHFQTTPHD GWDFDGVNEL VSFDYQEGGK TIKAAATADR NGFFYVLDRT
NGKFIRGFPF VDKITWAKGL DKNGRPIYDD SNRPGSPSAA EKGKSVFAAP AFLGAKNWMP
MAYSQDTGLF YVPSNEWGMD IWNEDIAYKK GAAYLGAGFT IKPLNEDYIG VLRAIDPKTG
KEVWRHKNYA PLWGGVLTTK GNLVFTGNPE GYLQAFNAKT GEKVWEFQTG SGVIGSPVTW
EMDGEQYVSV LSGWGGAVPL WGGEVAKRVK HLNQGGMLWT FKLPKELVAK R
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