Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pmen_1917 |
Symbol | fadE |
ID | 5110045 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas mendocina ymp |
Kingdom | Bacteria |
Replicon accession | NC_009439 |
Strand | - |
Start bp | 2108149 |
End bp | 2110596 |
Gene Length | 2448 bp |
Protein Length | 815 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 640503152 |
Product | acyl-CoA dehydrogenase |
Protein accession | YP_001187411 |
Protein GI | 146306946 |
COG category | [I] Lipid transport and metabolism |
COG ID | [COG1960] Acyl-CoA dehydrogenases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.00575597 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 37 |
Fosmid unclonability p-value | 0.572589 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCTCGTCA TCTGGTTGCT GGTTCTGCTG CTCGGGGTCG CCTACCTGGC CCATAGCCGT ACCGCCGCCC TGCCCGCCCT CGGCATCACC GCAGCCTATC TGCTGGCCAT GGCCCTGTTC AGCCCGGTAC CCGGCTGGCT GCAACTGCTG CTATGGATCA TCACCGCGGC GGTGGCCGCC TTCGTCGTGC TCGGCGACCT GCGCCGGCAG TTCTTCAGCG GCCCGCTGTT CAGCTGGTTC CAGCGCGTCC TGCCACCGAT GTCCGCCACC GAGCGCGACG CCATCGAGGC CGGCACCGTG TGGTGGGACG GCGAACTGTT CAGCGGCCGA CCGAACTGGG AAACGCTGCT GGCTTATCCC AAGGCCAGGC TGAGCGAAGA AGAACAGGCC TTCATCGACG GCCCCACCGA AGAACTCTGC GCGATGATCA GCGACTGGCA AGTCGGACAG GAAATGGACC TGCCGGAGAA AGCCTGGGAG CACATCAAGC AGCATGGCTT CTTCGCCCTG ATCATCCCCA AGGAATACGG CGGCAAGGGC TTCTCTGCCT ACGCGCACTC GCAGGTGGCA ATGAAGCTGG CGACCCGCAG CGGCGACCTG GCCTCCACCG TGATGGTGCC CAACTCCCTC GGTCCGGCCG AGCTGCTGCT TCATTACGGC ACAGAAGAAC AGCGCAACCA TTATCTGCCG CGCCTGGCGC GTGGCGAGGA CATCCCCTGC TTCGCCCTTA CCGGCCCGCT GGCCGGCTCC GACGCCGGCG CCATGCCCGA CACCGGCATC ATCTGCAAGG GCCAGTTCAA CGGCGAAGAA GTGATCGGCC TGCGCCTGAA CTGGGAAAAG CGCTACATCA CCCTCGGTCC GGTGGCCACC CTGCTCGGCC TCGCCTTCAA GGCCTACGAC CCGGATCATC TGCTGGGCGA CAAGGTGGAC CTCGGCATCA GCCTGGCGCT GATCCCCACC GATACCCCCG GCGTGGAAAT CGGGCGCCGC CACCTGCCAC TGGGCGCCGC CTTCATGAAC GGGCCGAACT CGGGCAAGGA CGTGTTCATT CCGCTCAACT ACCTGATCGG TGGCCAGGAG TATCTCGGCA AGGGCTGGAT GATGCTGATG AACTGCCTGT CGGTGGGCCG CTCCATCTCG CTGCCGGCCG TCGGTACCGG TGCGGCCAAG TTCACCAGCC TCGCCACCGG CCAGTACGCC CAGTTGCGTG AGCAGTTCAA CGTACCGCTG GCCGCCTTCG AGGGCATTCA GGAAGCGCTG GCGCGTATCG GCGGCAACGC CTGGCTGATG GACAGCGCGC GCATCCTCAC CGCCAATGCC GTCGACCTGG GCGAGAAACC CTCAGTGCTG TCGGCAATTC TCAAGTACCA CCTGACCGAG CGCGGCCGCG AGTGCATCGG CCACGCCATG GACGTGCATG GCGGCAAGGG CATCATCATG GGTCCGAACA ACTACCTGGC CCGCTCCTGG CAGGGGGCGC CGATCTTCAT CACCGTCGAG GGCGCCAATA TCCTCTCGCG CAACCTGATG ATCTTCGGCC AGGGCGCGAT CCGTTGCCAT CCCTACGTGC TCAAGGAAAT GGCCCTGGCC GACCGTGAGG ACAAGGACCA GGCGCTGACC GAGTTCGATG CGTTGCTGAT GAGCCATATC GGCTTCGCCG TCGGCAACGC CGCCAGCAGC TTCCTTCTGG GTCTGACCCT GGGACGCCTG GGCACGGTGC CCGGCGATGA CCTCAGCCAG CCCTACTACC GTGCGCTCAA TCGCCTGGCC GCGGCCTTCG CCCTGTGCGC CGACAGCAGC ATGATGCTGC TGGGCGGCGA TCTGAAGCGC CGCGAACGCC TCTCCGCGCG CCTGGGCGAC GTGCTCAGCC ATCTCTACCT GGGTTCGGCC GCGCTCAAGC GCTACCACGA CCTCGACTAC CCGCAGGCCG TCAGACCGCT GGTGCGCTGG GCCATGGAGG AGAATCTCTT TCATGCCGAA CAGGCGCTCG ACGAACTGCT GAGCAACTTC CCCAACCGCT TGTTCGGCTG CCTGTTGAAA GTACTGGTCT TCCCCCTTGG TCGTCGTCAC CACGGCCCGA GCGACGTGCT GGACGCGGAG GTAGCCGCGA TCATCGGCCG CCAGGCCGGC GACCCTGCCC TGGAATCGGT GCTGGAAGGC TGCTACCGAC CGCAGGCGGA CCAGGATTCG GTGGGTGCGC TGCAACATGC GCTGAACCTG GTGCAGGCCA GCCAGGACGC CCGCAAACGC CTGAACCAGG CGCTCAAGGA CGGCAGCCTG CAGCCGGCAC CGGGCCAGGA TGCCATCGAA GCGGCGATTG CCGCCGGTAT CCTCGATGGC GAGCAGGGCC TGCGCCTGCA AGCAGCCGAA GCGGCGCGGC GGCGGGTGAT CGACGTCGAC GACTTCACCA AGGAAGAGCT CAAGCTGAGC CGCGGCACGG TGCGCTGA
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Protein sequence | MLVIWLLVLL LGVAYLAHSR TAALPALGIT AAYLLAMALF SPVPGWLQLL LWIITAAVAA FVVLGDLRRQ FFSGPLFSWF QRVLPPMSAT ERDAIEAGTV WWDGELFSGR PNWETLLAYP KARLSEEEQA FIDGPTEELC AMISDWQVGQ EMDLPEKAWE HIKQHGFFAL IIPKEYGGKG FSAYAHSQVA MKLATRSGDL ASTVMVPNSL GPAELLLHYG TEEQRNHYLP RLARGEDIPC FALTGPLAGS DAGAMPDTGI ICKGQFNGEE VIGLRLNWEK RYITLGPVAT LLGLAFKAYD PDHLLGDKVD LGISLALIPT DTPGVEIGRR HLPLGAAFMN GPNSGKDVFI PLNYLIGGQE YLGKGWMMLM NCLSVGRSIS LPAVGTGAAK FTSLATGQYA QLREQFNVPL AAFEGIQEAL ARIGGNAWLM DSARILTANA VDLGEKPSVL SAILKYHLTE RGRECIGHAM DVHGGKGIIM GPNNYLARSW QGAPIFITVE GANILSRNLM IFGQGAIRCH PYVLKEMALA DREDKDQALT EFDALLMSHI GFAVGNAASS FLLGLTLGRL GTVPGDDLSQ PYYRALNRLA AAFALCADSS MMLLGGDLKR RERLSARLGD VLSHLYLGSA ALKRYHDLDY PQAVRPLVRW AMEENLFHAE QALDELLSNF PNRLFGCLLK VLVFPLGRRH HGPSDVLDAE VAAIIGRQAG DPALESVLEG CYRPQADQDS VGALQHALNL VQASQDARKR LNQALKDGSL QPAPGQDAIE AAIAAGILDG EQGLRLQAAE AARRRVIDVD DFTKEELKLS RGTVR
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