Gene Pmen_1917 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPmen_1917 
SymbolfadE 
ID5110045 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas mendocina ymp 
KingdomBacteria 
Replicon accessionNC_009439 
Strand
Start bp2108149 
End bp2110596 
Gene Length2448 bp 
Protein Length815 aa 
Translation table11 
GC content66% 
IMG OID640503152 
Productacyl-CoA dehydrogenase 
Protein accessionYP_001187411 
Protein GI146306946 
COG category[I] Lipid transport and metabolism 
COG ID[COG1960] Acyl-CoA dehydrogenases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00575597 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones37 
Fosmid unclonability p-value0.572589 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCTCGTCA TCTGGTTGCT GGTTCTGCTG CTCGGGGTCG CCTACCTGGC CCATAGCCGT 
ACCGCCGCCC TGCCCGCCCT CGGCATCACC GCAGCCTATC TGCTGGCCAT GGCCCTGTTC
AGCCCGGTAC CCGGCTGGCT GCAACTGCTG CTATGGATCA TCACCGCGGC GGTGGCCGCC
TTCGTCGTGC TCGGCGACCT GCGCCGGCAG TTCTTCAGCG GCCCGCTGTT CAGCTGGTTC
CAGCGCGTCC TGCCACCGAT GTCCGCCACC GAGCGCGACG CCATCGAGGC CGGCACCGTG
TGGTGGGACG GCGAACTGTT CAGCGGCCGA CCGAACTGGG AAACGCTGCT GGCTTATCCC
AAGGCCAGGC TGAGCGAAGA AGAACAGGCC TTCATCGACG GCCCCACCGA AGAACTCTGC
GCGATGATCA GCGACTGGCA AGTCGGACAG GAAATGGACC TGCCGGAGAA AGCCTGGGAG
CACATCAAGC AGCATGGCTT CTTCGCCCTG ATCATCCCCA AGGAATACGG CGGCAAGGGC
TTCTCTGCCT ACGCGCACTC GCAGGTGGCA ATGAAGCTGG CGACCCGCAG CGGCGACCTG
GCCTCCACCG TGATGGTGCC CAACTCCCTC GGTCCGGCCG AGCTGCTGCT TCATTACGGC
ACAGAAGAAC AGCGCAACCA TTATCTGCCG CGCCTGGCGC GTGGCGAGGA CATCCCCTGC
TTCGCCCTTA CCGGCCCGCT GGCCGGCTCC GACGCCGGCG CCATGCCCGA CACCGGCATC
ATCTGCAAGG GCCAGTTCAA CGGCGAAGAA GTGATCGGCC TGCGCCTGAA CTGGGAAAAG
CGCTACATCA CCCTCGGTCC GGTGGCCACC CTGCTCGGCC TCGCCTTCAA GGCCTACGAC
CCGGATCATC TGCTGGGCGA CAAGGTGGAC CTCGGCATCA GCCTGGCGCT GATCCCCACC
GATACCCCCG GCGTGGAAAT CGGGCGCCGC CACCTGCCAC TGGGCGCCGC CTTCATGAAC
GGGCCGAACT CGGGCAAGGA CGTGTTCATT CCGCTCAACT ACCTGATCGG TGGCCAGGAG
TATCTCGGCA AGGGCTGGAT GATGCTGATG AACTGCCTGT CGGTGGGCCG CTCCATCTCG
CTGCCGGCCG TCGGTACCGG TGCGGCCAAG TTCACCAGCC TCGCCACCGG CCAGTACGCC
CAGTTGCGTG AGCAGTTCAA CGTACCGCTG GCCGCCTTCG AGGGCATTCA GGAAGCGCTG
GCGCGTATCG GCGGCAACGC CTGGCTGATG GACAGCGCGC GCATCCTCAC CGCCAATGCC
GTCGACCTGG GCGAGAAACC CTCAGTGCTG TCGGCAATTC TCAAGTACCA CCTGACCGAG
CGCGGCCGCG AGTGCATCGG CCACGCCATG GACGTGCATG GCGGCAAGGG CATCATCATG
GGTCCGAACA ACTACCTGGC CCGCTCCTGG CAGGGGGCGC CGATCTTCAT CACCGTCGAG
GGCGCCAATA TCCTCTCGCG CAACCTGATG ATCTTCGGCC AGGGCGCGAT CCGTTGCCAT
CCCTACGTGC TCAAGGAAAT GGCCCTGGCC GACCGTGAGG ACAAGGACCA GGCGCTGACC
GAGTTCGATG CGTTGCTGAT GAGCCATATC GGCTTCGCCG TCGGCAACGC CGCCAGCAGC
TTCCTTCTGG GTCTGACCCT GGGACGCCTG GGCACGGTGC CCGGCGATGA CCTCAGCCAG
CCCTACTACC GTGCGCTCAA TCGCCTGGCC GCGGCCTTCG CCCTGTGCGC CGACAGCAGC
ATGATGCTGC TGGGCGGCGA TCTGAAGCGC CGCGAACGCC TCTCCGCGCG CCTGGGCGAC
GTGCTCAGCC ATCTCTACCT GGGTTCGGCC GCGCTCAAGC GCTACCACGA CCTCGACTAC
CCGCAGGCCG TCAGACCGCT GGTGCGCTGG GCCATGGAGG AGAATCTCTT TCATGCCGAA
CAGGCGCTCG ACGAACTGCT GAGCAACTTC CCCAACCGCT TGTTCGGCTG CCTGTTGAAA
GTACTGGTCT TCCCCCTTGG TCGTCGTCAC CACGGCCCGA GCGACGTGCT GGACGCGGAG
GTAGCCGCGA TCATCGGCCG CCAGGCCGGC GACCCTGCCC TGGAATCGGT GCTGGAAGGC
TGCTACCGAC CGCAGGCGGA CCAGGATTCG GTGGGTGCGC TGCAACATGC GCTGAACCTG
GTGCAGGCCA GCCAGGACGC CCGCAAACGC CTGAACCAGG CGCTCAAGGA CGGCAGCCTG
CAGCCGGCAC CGGGCCAGGA TGCCATCGAA GCGGCGATTG CCGCCGGTAT CCTCGATGGC
GAGCAGGGCC TGCGCCTGCA AGCAGCCGAA GCGGCGCGGC GGCGGGTGAT CGACGTCGAC
GACTTCACCA AGGAAGAGCT CAAGCTGAGC CGCGGCACGG TGCGCTGA
 
Protein sequence
MLVIWLLVLL LGVAYLAHSR TAALPALGIT AAYLLAMALF SPVPGWLQLL LWIITAAVAA 
FVVLGDLRRQ FFSGPLFSWF QRVLPPMSAT ERDAIEAGTV WWDGELFSGR PNWETLLAYP
KARLSEEEQA FIDGPTEELC AMISDWQVGQ EMDLPEKAWE HIKQHGFFAL IIPKEYGGKG
FSAYAHSQVA MKLATRSGDL ASTVMVPNSL GPAELLLHYG TEEQRNHYLP RLARGEDIPC
FALTGPLAGS DAGAMPDTGI ICKGQFNGEE VIGLRLNWEK RYITLGPVAT LLGLAFKAYD
PDHLLGDKVD LGISLALIPT DTPGVEIGRR HLPLGAAFMN GPNSGKDVFI PLNYLIGGQE
YLGKGWMMLM NCLSVGRSIS LPAVGTGAAK FTSLATGQYA QLREQFNVPL AAFEGIQEAL
ARIGGNAWLM DSARILTANA VDLGEKPSVL SAILKYHLTE RGRECIGHAM DVHGGKGIIM
GPNNYLARSW QGAPIFITVE GANILSRNLM IFGQGAIRCH PYVLKEMALA DREDKDQALT
EFDALLMSHI GFAVGNAASS FLLGLTLGRL GTVPGDDLSQ PYYRALNRLA AAFALCADSS
MMLLGGDLKR RERLSARLGD VLSHLYLGSA ALKRYHDLDY PQAVRPLVRW AMEENLFHAE
QALDELLSNF PNRLFGCLLK VLVFPLGRRH HGPSDVLDAE VAAIIGRQAG DPALESVLEG
CYRPQADQDS VGALQHALNL VQASQDARKR LNQALKDGSL QPAPGQDAIE AAIAAGILDG
EQGLRLQAAE AARRRVIDVD DFTKEELKLS RGTVR