Gene Pmen_1879 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPmen_1879 
Symbol 
ID5110008 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas mendocina ymp 
KingdomBacteria 
Replicon accessionNC_009439 
Strand
Start bp2071766 
End bp2072089 
Gene Length324 bp 
Protein Length107 aa 
Translation table11 
GC content58% 
IMG OID640503110 
Producthelix-hairpin-helix repeat-containing competence protein ComEA 
Protein accessionYP_001187374 
Protein GI146306909 
COG category[L] Replication, recombination and repair 
COG ID[COG1555] DNA uptake protein and related DNA-binding proteins 
TIGRFAM ID[TIGR00426] competence protein ComEA helix-hairpin-helix repeat region
[TIGR01259] comEA protein 


Plasmid Coverage information

Num covering plasmid clones26 
Plasmid unclonability p-value0.382969 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones38 
Fosmid unclonability p-value0.520774 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCTGAAAA ATCGTCTTTC CTCTCTGCTG TTTGCCGTTC TCGCTTCCGT TTCTCTGGCT 
GCCACCGCAG CCGAACCTCC GAAAACCGAA AGTGCCAAGC CTGCAGCTGT TCAGGCCGCG
CAGGTTGCTA CTGTCAATCT GAACACTGCC GATGCAGCGA CCCTGCAGAG GGAGTTGGCG
GGTGTTGGCG CGGCCAAGGC ACAGGCGATT GTTGCCTACC GTGAGGAGCA CGGTGACTTC
GCTTCGGTTG ACGAGCTGCT GGAGGTGAAG GGTATTGGTC AGGCGACGCT GGAGAAGAAC
CGCGACAAGT TGAGCGTGAA CTGA
 
Protein sequence
MLKNRLSSLL FAVLASVSLA ATAAEPPKTE SAKPAAVQAA QVATVNLNTA DAATLQRELA 
GVGAAKAQAI VAYREEHGDF ASVDELLEVK GIGQATLEKN RDKLSVN