Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pmen_1861 |
Symbol | |
ID | 5109991 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas mendocina ymp |
Kingdom | Bacteria |
Replicon accession | NC_009439 |
Strand | + |
Start bp | 2051770 |
End bp | 2053533 |
Gene Length | 1764 bp |
Protein Length | 587 aa |
Translation table | 11 |
GC content | 56% |
IMG OID | 640503093 |
Product | citrate transporter |
Protein accession | YP_001187357 |
Protein GI | 146306892 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG0471] Di- and tricarboxylate transporters |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 0.394844 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 43 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCCGAGTG ATGCTTCGCT GGTCATCGGG GTTGTGTCCG TCGTGGTGCT TCTGATGGCG TTAACCCGTA TCGCCCCCGA TTTGATCCTG ATGGCAGCAC TGGCAGCCCT TATGCTTTGC GGCATCCTCA CCGCAGAGGA GGCATTGACC GGCTTTGCCA ATACAGGAGT CATGACGATT GCTGCGTTAT ACGTGGTCTC GGCTGGCTTG CGGGAAACAG GTGCAATCCG TTTAGCCGCG TCGTTACTGG GGATGCCTAA AACCTCACGC GATGCTCAAC TAAGGCTGAT GGCACCGGTT TCATTGCTAA GCGCCTTTCT CAATAACACC GCTGTGGTGT CAATGTTCAT TCCTGCAGTG CAGGAATGGT GTCAGCGCCT GAAGATGTCG CCGTCGAAAT TACTGCTGCC GTTGAGCTAC ACAGCAATGC TTGGTGGTAC CTGCACCTTG ATCGGCACCA GCACCAACTT GGTGGTGGAT GGCCTGCTGC AGAAACAGTA TGGGATATCC TTATCGCTTT TCGAGTTGGC TTGGGTAGGT ATTCCGATAC TTCTGGTCGG TAGTGTCTAC TTGATGCTGT TTGCCGACAA GCTACTGCCT GTGCGGGTTG GCGCCATCGA ACAACTCGAG CAGGCACGTG AGTACTGTGT CGCCGTGCGC ATTCCGTCAC AAAGTCCGCT TATCGGCAAG ACCGTCGCCG AGGCGGGACT GCGCAATCTT GCCTATGCCT ACCTGGCGGA AATCGAGCGT GCGGAGCGGC TGTTGACGGC GGTATCGCCT GATACCTTGT TGTTGGAAAA CGACTGTCTG TTTTTCATTG GCGCTCCAGA GTGTGCCCTG GAGCTTCGTA ATATCCGTGG ATTGACGCCA GCTGCTGGAA ACGTAGGCAA GCTGGATATC GCTAGCCATC AGCGATGCTT GATCGAGGTC GTACTAGGGC CCGATTTTCC AGGGTTGGGC CAGACCATCA GAGAGTGCCA GTTCCGCACG CGCTACCAGG CGGTCATCCT TTCTGTCGGG AGGCAAGGGC AGCGGCTGCC TGGCAAGCTT GGCGACATAG TGCTCAAAGT AGGAGACACC TTGTTGGTAG AGGCGAGCAA GGTGTTTGTC GAACAGTACA GGTGTCGTCG CGACTTCCTG CTTGTCAGCG CATTGAACGA TTCCACGCCT GTCGACTACA GTAAGTCGCC ACGAGCGATT GCAATACTCG TGTGCATGGT CGTGCTAAGT GCCTGTGAGT TTTTGAGCAT ACTCGAAGCG GCTCTGCTGG CGGCAGGGGC GATGATAGCG ACTCGGTGTG TCACCGCCAG CCATGCTCGG CGCTCTGTAG ATGTCAGCGT ATTGGTCGTC ATCGCTGCTT CCTTTGCCCT CGGTACAGCC ATGCTCAAGA CGGGGGCGGC AGGGGCCATT GTCGATTCAT TGGTCGGTGA TGGCGCGCTG AGCCCCTGGC TACTGCTGGC ATTGATATAT CTGCTCACGA CGGCATTTAC CGAGGTCATT TCAAACAACG CAGCAGCAGT CTTGATGTTC CCCATTGCGT CCGCAGTGGC GGAGCAGCAG GGGCTCAATG TTCTACCTTT TGCGCTTGCC ATCATGTTCG CGGCGTCGGC AAGCTTCATG ACCCCGCTGG GTTATCAGAC CAATCTCATG GTTTATGGGC CTGGTGGTTA TCACGCCAGG GACTATCTGC GAGTTGGCCT GCCTTTGAAT ATAGTGGTCG GAATGACGGC GCTTTGGCTG ATCCCCGTTG TTTGGCCATT TTGA
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Protein sequence | MPSDASLVIG VVSVVVLLMA LTRIAPDLIL MAALAALMLC GILTAEEALT GFANTGVMTI AALYVVSAGL RETGAIRLAA SLLGMPKTSR DAQLRLMAPV SLLSAFLNNT AVVSMFIPAV QEWCQRLKMS PSKLLLPLSY TAMLGGTCTL IGTSTNLVVD GLLQKQYGIS LSLFELAWVG IPILLVGSVY LMLFADKLLP VRVGAIEQLE QAREYCVAVR IPSQSPLIGK TVAEAGLRNL AYAYLAEIER AERLLTAVSP DTLLLENDCL FFIGAPECAL ELRNIRGLTP AAGNVGKLDI ASHQRCLIEV VLGPDFPGLG QTIRECQFRT RYQAVILSVG RQGQRLPGKL GDIVLKVGDT LLVEASKVFV EQYRCRRDFL LVSALNDSTP VDYSKSPRAI AILVCMVVLS ACEFLSILEA ALLAAGAMIA TRCVTASHAR RSVDVSVLVV IAASFALGTA MLKTGAAGAI VDSLVGDGAL SPWLLLALIY LLTTAFTEVI SNNAAAVLMF PIASAVAEQQ GLNVLPFALA IMFAASASFM TPLGYQTNLM VYGPGGYHAR DYLRVGLPLN IVVGMTALWL IPVVWPF
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