Gene Pmen_1861 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPmen_1861 
Symbol 
ID5109991 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas mendocina ymp 
KingdomBacteria 
Replicon accessionNC_009439 
Strand
Start bp2051770 
End bp2053533 
Gene Length1764 bp 
Protein Length587 aa 
Translation table11 
GC content56% 
IMG OID640503093 
Productcitrate transporter 
Protein accessionYP_001187357 
Protein GI146306892 
COG category[P] Inorganic ion transport and metabolism 
COG ID[COG0471] Di- and tricarboxylate transporters 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value0.394844 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones43 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCGAGTG ATGCTTCGCT GGTCATCGGG GTTGTGTCCG TCGTGGTGCT TCTGATGGCG 
TTAACCCGTA TCGCCCCCGA TTTGATCCTG ATGGCAGCAC TGGCAGCCCT TATGCTTTGC
GGCATCCTCA CCGCAGAGGA GGCATTGACC GGCTTTGCCA ATACAGGAGT CATGACGATT
GCTGCGTTAT ACGTGGTCTC GGCTGGCTTG CGGGAAACAG GTGCAATCCG TTTAGCCGCG
TCGTTACTGG GGATGCCTAA AACCTCACGC GATGCTCAAC TAAGGCTGAT GGCACCGGTT
TCATTGCTAA GCGCCTTTCT CAATAACACC GCTGTGGTGT CAATGTTCAT TCCTGCAGTG
CAGGAATGGT GTCAGCGCCT GAAGATGTCG CCGTCGAAAT TACTGCTGCC GTTGAGCTAC
ACAGCAATGC TTGGTGGTAC CTGCACCTTG ATCGGCACCA GCACCAACTT GGTGGTGGAT
GGCCTGCTGC AGAAACAGTA TGGGATATCC TTATCGCTTT TCGAGTTGGC TTGGGTAGGT
ATTCCGATAC TTCTGGTCGG TAGTGTCTAC TTGATGCTGT TTGCCGACAA GCTACTGCCT
GTGCGGGTTG GCGCCATCGA ACAACTCGAG CAGGCACGTG AGTACTGTGT CGCCGTGCGC
ATTCCGTCAC AAAGTCCGCT TATCGGCAAG ACCGTCGCCG AGGCGGGACT GCGCAATCTT
GCCTATGCCT ACCTGGCGGA AATCGAGCGT GCGGAGCGGC TGTTGACGGC GGTATCGCCT
GATACCTTGT TGTTGGAAAA CGACTGTCTG TTTTTCATTG GCGCTCCAGA GTGTGCCCTG
GAGCTTCGTA ATATCCGTGG ATTGACGCCA GCTGCTGGAA ACGTAGGCAA GCTGGATATC
GCTAGCCATC AGCGATGCTT GATCGAGGTC GTACTAGGGC CCGATTTTCC AGGGTTGGGC
CAGACCATCA GAGAGTGCCA GTTCCGCACG CGCTACCAGG CGGTCATCCT TTCTGTCGGG
AGGCAAGGGC AGCGGCTGCC TGGCAAGCTT GGCGACATAG TGCTCAAAGT AGGAGACACC
TTGTTGGTAG AGGCGAGCAA GGTGTTTGTC GAACAGTACA GGTGTCGTCG CGACTTCCTG
CTTGTCAGCG CATTGAACGA TTCCACGCCT GTCGACTACA GTAAGTCGCC ACGAGCGATT
GCAATACTCG TGTGCATGGT CGTGCTAAGT GCCTGTGAGT TTTTGAGCAT ACTCGAAGCG
GCTCTGCTGG CGGCAGGGGC GATGATAGCG ACTCGGTGTG TCACCGCCAG CCATGCTCGG
CGCTCTGTAG ATGTCAGCGT ATTGGTCGTC ATCGCTGCTT CCTTTGCCCT CGGTACAGCC
ATGCTCAAGA CGGGGGCGGC AGGGGCCATT GTCGATTCAT TGGTCGGTGA TGGCGCGCTG
AGCCCCTGGC TACTGCTGGC ATTGATATAT CTGCTCACGA CGGCATTTAC CGAGGTCATT
TCAAACAACG CAGCAGCAGT CTTGATGTTC CCCATTGCGT CCGCAGTGGC GGAGCAGCAG
GGGCTCAATG TTCTACCTTT TGCGCTTGCC ATCATGTTCG CGGCGTCGGC AAGCTTCATG
ACCCCGCTGG GTTATCAGAC CAATCTCATG GTTTATGGGC CTGGTGGTTA TCACGCCAGG
GACTATCTGC GAGTTGGCCT GCCTTTGAAT ATAGTGGTCG GAATGACGGC GCTTTGGCTG
ATCCCCGTTG TTTGGCCATT TTGA
 
Protein sequence
MPSDASLVIG VVSVVVLLMA LTRIAPDLIL MAALAALMLC GILTAEEALT GFANTGVMTI 
AALYVVSAGL RETGAIRLAA SLLGMPKTSR DAQLRLMAPV SLLSAFLNNT AVVSMFIPAV
QEWCQRLKMS PSKLLLPLSY TAMLGGTCTL IGTSTNLVVD GLLQKQYGIS LSLFELAWVG
IPILLVGSVY LMLFADKLLP VRVGAIEQLE QAREYCVAVR IPSQSPLIGK TVAEAGLRNL
AYAYLAEIER AERLLTAVSP DTLLLENDCL FFIGAPECAL ELRNIRGLTP AAGNVGKLDI
ASHQRCLIEV VLGPDFPGLG QTIRECQFRT RYQAVILSVG RQGQRLPGKL GDIVLKVGDT
LLVEASKVFV EQYRCRRDFL LVSALNDSTP VDYSKSPRAI AILVCMVVLS ACEFLSILEA
ALLAAGAMIA TRCVTASHAR RSVDVSVLVV IAASFALGTA MLKTGAAGAI VDSLVGDGAL
SPWLLLALIY LLTTAFTEVI SNNAAAVLMF PIASAVAEQQ GLNVLPFALA IMFAASASFM
TPLGYQTNLM VYGPGGYHAR DYLRVGLPLN IVVGMTALWL IPVVWPF