| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_1841 |
|---|
| Symbol | |
|---|
| ID | 5109971 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas mendocina ymp |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009439 |
|---|
| Strand | + |
|---|
| Start bp | 2026864 |
|---|
| End bp | 2028021 |
|---|
| Gene Length | 1158 bp |
|---|
| Protein Length | 385 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 640503073 |
|---|
| Product | ribosomal large subunit pseudouridine synthase B |
|---|
| Protein accession | YP_001187337 |
|---|
| Protein GI | 146306872 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases |
|---|
| TIGRFAM ID | [TIGR00093] pseudouridine synthase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 41 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACAGAGC ACGAACAACC GCGCCCTGCA GGCGAGAAAC TGCAGAAAGT CCTGGCCCGC
ATGGGCCTCG CGTCCCGTCG CGAAATCGAA ACCTGGATCG GCGAAGGCCG GGTCAAGGTC
AATGGCGCTG CTGCCACCCT GGGCCAGCGT GTCGATGCCA ACGACGCCAT CGCCCTCGAT
GGTCGCCTGC TCAAGCGCGA AGAGATCACC GGCTCGGTGC GTCGCGTTCT GATCTACAAC
AAGCCCGATG GCGAGATCTG CACCCGTGAC GACCCGGAAG GCCGTCCTAC CGTGTTCGAC
CGTCTGCCAC GCCCCAAGGA AGGCCGCTGG ATCAATATCG GTCGCCTCGA CATCAACACC
ACCGGCCTGC TGCTGTTCAC CACTGACGGT GAACTGGCCA ACCGCCTGAT GCACCCCTCC
TACCAGATGG ACCGCGAGTA CGCGGTGCGT GTGCGCGGCG AGGTGACCGA GGAGATGCTG
GAGAACCTCA AGAAAGGCGT GATGCTCGAA GACGGCCCGG CCAAGTTCAC CGACATCAAG
GAAGCGCCGG GTGGCGAGGG CTTCAACCAC TGGTATCACT GCGTGGTGAT GGAAGGTCGC
AACCGCGAGG TGCGCCGTCT GTGGGAATCC CAGGGGCTGG TGGTCAGCCG TCTGAAGCGC
GTGCGCTTCG GTCCGGTATT CCTGACGTCA GACCTGACCA TGGGCCGCTG GCGTGAGATG
GATCAGCGCG AAGTGGACAT CCTCAGCGCC GAGGTGGGAC TGGCCCCGCA GGCGCTGCCG
GCGATGAAGG AGAAAACGCG CGAGAAGCTC GACCGCCTGC AGCGCAAGTC GGCCAAGCCG
GTGGAGGTGC GTGGCAAGCG CGTGCTGCGT CCGGCCAAGG ACGAAGCCGG TGCCGAAGGC
GCTCGCCCGA GCCGTGCGCC GCGCCGTGAC GATGGCGAGC AGCGCGCTCC ACGCGGCCCG
CGCAAGGAAG GCGGCGAGCG TCGCGAAAGC GGTCGCGGTA CGCCGGTGGC CGAGCGTCCG
GGGGACGTGA AGAAACGTCA GCCGCGCCCT GCGGTGGAAC TGGCCGACCG CCCGGCGCGC
AAGCCGCGTC CGGCAGCACC GGGCAAGCGT CCGCCGGCTG GCGACGGCCA GCGTCCGGGC
TTCGGCCGCA AGCGCTGA
|
|---|
| Protein sequence | MTEHEQPRPA GEKLQKVLAR MGLASRREIE TWIGEGRVKV NGAAATLGQR VDANDAIALD
GRLLKREEIT GSVRRVLIYN KPDGEICTRD DPEGRPTVFD RLPRPKEGRW INIGRLDINT
TGLLLFTTDG ELANRLMHPS YQMDREYAVR VRGEVTEEML ENLKKGVMLE DGPAKFTDIK
EAPGGEGFNH WYHCVVMEGR NREVRRLWES QGLVVSRLKR VRFGPVFLTS DLTMGRWREM
DQREVDILSA EVGLAPQALP AMKEKTREKL DRLQRKSAKP VEVRGKRVLR PAKDEAGAEG
ARPSRAPRRD DGEQRAPRGP RKEGGERRES GRGTPVAERP GDVKKRQPRP AVELADRPAR
KPRPAAPGKR PPAGDGQRPG FGRKR
|
|---|
| |