| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_1808 |
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| Symbol | |
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| ID | 5109938 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | - |
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| Start bp | 1994731 |
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| End bp | 1996683 |
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| Gene Length | 1953 bp |
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| Protein Length | 650 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 640503040 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_001187304 |
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| Protein GI | 146306839 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2200] FOG: EAL domain
[COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.38633 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 37 |
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| Fosmid unclonability p-value | 0.679968 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCCCTAC TAAAGCAACT GTTTCTCGCC ATCTGCCTGT TTCTGGTAGT GGCTTTCACC
GGCAGTTTCA TCGCCGGGGT GGAGAGCTCG CGCGAACAGT TGATCAGCCA GTTGCGCTCG
CATGCCCAGG ACGCCGCCAC GGCGCTGGCG CTGTCGATGA CGCCGCACGT GGACGACCCG
GCGATGATCG AGCTGATGGT CAGCTCGATC TTCGACAGTG GCTACTTCGC CAGCATCCGC
GTGGTGCGCA TTCCCGACGA CAGCGTGATC GTCGAGCGCA CCACCGAAAT CAGGCCCGAA
AACGTGCCCG GCTGGTTCGT CGACCTGGTC GATCTGCAGC CCCAGGGTGG CGATGCGCTG
ATCATGCGCG GCTGGGAACA GGCCGCCAGG GTCGAGGTGC TCAGCCATCC GCAGTTCGCC
CTGGCCAAGC TGTGGGACAG CGCCCTCGGC AGCCTGTTCT GGCTGCTGCT GTGCGGCCTG
GTCAGCGCCG TGCTCGGTGG CTGGCTGCTG CGCACACAGC TGCGCCCGCT GGACAACATG
GTGCAACAGG CGCAGGCCAT CAGCCGCCGC GAGTTCCTCA CCCTGCCCCG CGTGCCCCGC
ACGCCGGAGC TCAAGCGTGT GGTGCTGGCG ATGAATCAGA TGGTCGACAA ACTCAAGACC
CTGTTTGCCG AAGAAGCCTC GCGCAGCGAG AAGCTGCGCG AGGAGGCTTA TCAGGACAGT
CTCACCGGCC TGGCCAACCG CCGCCAGTTC GACATCCGCC TGAGCAACCA GCTGGTGGTC
AGCGAGCAGC ATCCCGACGG CTACCTGCTG CTGCTGCGCC TCAACGACCT CGGCGGCCTC
AACCAGCGTC TCGGCGGTCA GCGTACCGAT GCACTGATCG CCGCACTGGG CGATGCGCTC
AAGCGTTTGC TGGAGAGCCC GGGCCGCAGC GAGTGGCTCG CCTCGCGCAA CCGCGGCGGC
GAATTCACCC TGCTCGCGCC GGGCCTCAAT CGCGACGACG CCGAGCGGCT GGCCAGCGAA
CTCAGCGACA TGCTGGACAA CCTGCGCCAG ACCGGTGCCA GCGACTGCAA TCCGGTGGCG
CATATCGGTA TCGCTGCGTT TCGCCCCGGC GAGGACGCCG GCGCCGTGCT CGGTCGCGCC
GATCAGGCCC TGGCCCAGGC GCAGAGCAAC GCGGACAGGT GCTGGGAGCG CCTCGACGAC
TTCACCGCCC AGAACAATCA GGGCCTGCAC GACTGGCGCA GCTGGATCGA TGATGCGCTC
AGCCAGGGCA AGCTGCAGCT GTACTTCCAG CCGGTGGCCG AATGCGCCAA CCGCGATCGC
CTGCTGCAGC ACAAGGTGCT GGCACGCCTG CTCGATCCGC AGGGCGAAGC CATCGCCGCC
GGGCGCTTCC TGCCCTGGAT CGAGCGTCTG GGATGGGCAG CGCGTTTCGA CCTGGCGATG
CTCGAGCACA GCCTCACCCA TCTGGCCCAG CATCCGCAGC CACTGGCGCT GAGCCTGTCA
GCTGCCACCC TGCGCGACGA ACGAAGCAAG GCACGCCTGC TGGAGATGCT GCGCAACCAT
CCGGAAGCCG CACACCTGAT GACATTGGAG GTGGACGAGC GCCACCTGCC ACCGCCCGCG
GAGCTCGAAG CGCTGAGCCA GAACGTGCGC GAAGCTGGTT ACAGCCTCGG CCTGCAGCAC
TTTGGGGGAC GCTTCAGCCT GATAGGAAAC CTGACCCATC TCGGTCTGGC CTACCTGAAG
ATCGACGGCA CCTACATTCG CGCCATCGAT CAGGAGAGCG ACAAGCGGCT GTTCATCGAG
GCGATCTTCC GTGCGACCAA CAGCATCGAT CTGCCGCTGA TCGCCGAGAT GGTGGAAACC
GAAGGGGAAC TCGAGGTGTT GACGGAGTTG GGCATACACG GCGCCATGGG CCGTCTGATC
GGCGCACCGG CGCCTTGGCA GCAGGAAGCG TAG
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| Protein sequence | MSLLKQLFLA ICLFLVVAFT GSFIAGVESS REQLISQLRS HAQDAATALA LSMTPHVDDP
AMIELMVSSI FDSGYFASIR VVRIPDDSVI VERTTEIRPE NVPGWFVDLV DLQPQGGDAL
IMRGWEQAAR VEVLSHPQFA LAKLWDSALG SLFWLLLCGL VSAVLGGWLL RTQLRPLDNM
VQQAQAISRR EFLTLPRVPR TPELKRVVLA MNQMVDKLKT LFAEEASRSE KLREEAYQDS
LTGLANRRQF DIRLSNQLVV SEQHPDGYLL LLRLNDLGGL NQRLGGQRTD ALIAALGDAL
KRLLESPGRS EWLASRNRGG EFTLLAPGLN RDDAERLASE LSDMLDNLRQ TGASDCNPVA
HIGIAAFRPG EDAGAVLGRA DQALAQAQSN ADRCWERLDD FTAQNNQGLH DWRSWIDDAL
SQGKLQLYFQ PVAECANRDR LLQHKVLARL LDPQGEAIAA GRFLPWIERL GWAARFDLAM
LEHSLTHLAQ HPQPLALSLS AATLRDERSK ARLLEMLRNH PEAAHLMTLE VDERHLPPPA
ELEALSQNVR EAGYSLGLQH FGGRFSLIGN LTHLGLAYLK IDGTYIRAID QESDKRLFIE
AIFRATNSID LPLIAEMVET EGELEVLTEL GIHGAMGRLI GAPAPWQQEA
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