| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_1804 |
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| Symbol | |
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| ID | 5109934 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | - |
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| Start bp | 1982663 |
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| End bp | 1984018 |
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| Gene Length | 1356 bp |
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| Protein Length | 451 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 640503036 |
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| Product | TolC family type I secretion outer membrane protein |
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| Protein accession | YP_001187300 |
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| Protein GI | 146306835 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01844] type I secretion outer membrane protein, TolC family |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 0.894432 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 37 |
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| Fosmid unclonability p-value | 0.601876 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGCACCC TAACCCCGCT ATGGAGCGCC ATGTTTTTGG CGACTGTTTG CAGTCAAGCG
CAAGCCATGA ATCTGTCGGA AGCGATTCAG AGCACGCTGG ACAACCATCC CGAGATCCAT
GCCGCAGCCA ACAGCCGTCT CTCATCGGAT GAAGACGTGA AATTCGCCAA GGGTGGCTAT
CTGCCGACTG TCGACCTGCT GGTGGGCTAT GGCCGAGAAC GCACCGACAG CCCCAGCACG
CGGGCTCTGG GCGACCACAA CAAGGAAACT CTGACCTATC GCGATGCCGA ACTGCGTCTG
CGGCAGATGC TGTTCGACGG ATTCAACACG CCCAACGAAG TGGCACGTAC CCAGGCGGTG
GTCAACTCGC GCGCCTATCG CCTGCTCGGC ACCTCCGAGA GCCTGGCGTT GCGTACGGTC
GAGGTGTATC TGGACGTATT GATGCGCCGC GAGATGGTCG ACCTGGCGCG CAACAATCTG
CAGGCGCACC AGCGCATCAA CGATCAGATC GGCTTGCGCA GCCGTCAGGG CGTGGGTAGC
ACCGCCGATC TCGACCAGTC CGAAGCGCGT CTGGCACTGG CGCAGAACAA CCTCTACACC
GAACAGGTCA ACCTGGCCGA TGCCGAAGCC AACTTCTTCA GCGCTGTCGG CCGCCTGCCC
GACCAGCTCG AATCGCCCGC CTCGATCAGA GGCAACATGC CGGCCGATCT GATGGCGGCC
CGGCAAACCG TGATGGACAA CAATCCCTTC CTGAAGTCGG CACAGGCCGA CGTGCATGCC
GCCGAGAAAC AGTACGAAGT GGCCAAGTCG CCCTTCTATC CGCGCTTCGA CCTGGAGCTC
GCCACCACCG CTGACGACAA CGTGCAGGGC GACGAAGGCC ACTACAACAC CTGGCGGGCC
GCCGTGGTGA TGAACTACAA CCTGTTCAAC GGCATGCGCG ACAAGGCCCG CCTGCAATCG
GCCGCGCATC AGATCAACGA GTCCATGGAC ATTCGCAACA ACGCGCTGCG GGTACTCAAC
GAGAACCTCT CGCTGGCCTG GAACGCCATG GAAAACGCCC GCCTGCAAAC CCCCAAGGCA
CGTGACTACG CGGATTACAC CGCGCGCGTG CGCGAGGCCT ACCAGCAGCA GTTCAGCCTG
GGCCAGCGCA CCCTGCTCGA TCTGCTCGAC AGCGAAAACG AACTGTTCAC CGCCAATCGC
CGCTACACCG AGGTTCGCTT CAGCGAGGAG TTCTCGATGT ATCGGGTGAT TGCGGCAATG
GGTGATCTGC TGCGTCAGCA ACAGGTCGTA GTCCCGGCAC AAGCCGTAGC CCTCACCGAC
GTGAAGAGCG AGGCGCGCTT GCCGGATATG AAGTAG
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| Protein sequence | MRTLTPLWSA MFLATVCSQA QAMNLSEAIQ STLDNHPEIH AAANSRLSSD EDVKFAKGGY
LPTVDLLVGY GRERTDSPST RALGDHNKET LTYRDAELRL RQMLFDGFNT PNEVARTQAV
VNSRAYRLLG TSESLALRTV EVYLDVLMRR EMVDLARNNL QAHQRINDQI GLRSRQGVGS
TADLDQSEAR LALAQNNLYT EQVNLADAEA NFFSAVGRLP DQLESPASIR GNMPADLMAA
RQTVMDNNPF LKSAQADVHA AEKQYEVAKS PFYPRFDLEL ATTADDNVQG DEGHYNTWRA
AVVMNYNLFN GMRDKARLQS AAHQINESMD IRNNALRVLN ENLSLAWNAM ENARLQTPKA
RDYADYTARV REAYQQQFSL GQRTLLDLLD SENELFTANR RYTEVRFSEE FSMYRVIAAM
GDLLRQQQVV VPAQAVALTD VKSEARLPDM K
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