Gene Pmen_1800 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPmen_1800 
Symbol 
ID5109930 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas mendocina ymp 
KingdomBacteria 
Replicon accessionNC_009439 
Strand
Start bp1976563 
End bp1978128 
Gene Length1566 bp 
Protein Length521 aa 
Translation table11 
GC content65% 
IMG OID640503032 
Productmethyl-accepting chemotaxis sensory transducer 
Protein accessionYP_001187296 
Protein GI146306831 
COG category[N] Cell motility
[T] Signal transduction mechanisms 
COG ID[COG0840] Methyl-accepting chemotaxis protein 
TIGRFAM ID[TIGR00229] PAS domain S-box 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value0.258308 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones37 
Fosmid unclonability p-value0.504821 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGCCAGA ACCTGCCAGT GACTCAACGC GAAAGAACCT TTGCCGCCGA TGAGCGCCTG 
ATCTCCACCA CCGACCTCAA CAGCAAGATC ACCTATTGCA ACGACGCCTT CGTCGCGATC
AGCGGCTTTA CCCGCGAAGA GCTGATCGGC CAGCCACACA ACATCGTGCG CCACCCGGAC
ATGCCGCCGA GCGTGTTCGG CCATATGTGG GACACCATCA AGCAGGGAAA GCCCTGGATG
GGCATCGTCA AGAACCGCTC GAAGAACGGT GACTTCTACT GGGTTAGTGC CTATGTCACG
CCGGTGTACG AAGACGGCCG CATGGTCGGT TACGAGTCGG TGCGTTCGCT GCCAAGCGAA
GCGCAGAAGC GCCGTGCGGA GCGGCTCTAC GCTCGCCTGC GCGAGGGCAA GCCTGCCGTG
CCACATCTGC AGAAGTGGAC CTACAGCCTG GTGCGTTCGT GGCCGCTGAT TCTCGCCGCA
GCCCTGATCC TGGGGCTGGA GTCGGTGCTC GACGGGGGCT GGCTGGCCGC CGTCACCTTC
GCCATCATGC TCGCGCTCGG GGTCTATCAG TTGTACCGCA CCCGTGCCCT GATCCTGCGG
ACGTTGGACG AGCATCCCAA AGCCTTTACC AGCGAACTGG TGGCGCTGAC CTACAGTGAC
AACCGAGGCG CCCAGGCATT GCTGGACATG GCCATGATCA GCGAGGAGGC GCGCCTGCAG
ACGGCGTTGA CGCGCCTGGA AGATGCGGGA GAGAACGTCA AGAAACGTGC CTCGCAGTCG
GCCGACCTGT CGCGCTCCGG TGCTGAGCTG CTCGATCAGC AGCGTGCCGA GACGGATCAG
TCGGCCACTG CCATCAACGA AATGGCCGCC ACCATTCAGG AGGTGACGCA CAACGTGCAG
AACACCTCGC ACGCCGCCGA AGAGGCCGAC CGGCTGGCCA GGGGCGGGCG CGATCTCGCC
GTGGGCAGTC TGGATTCCAT GCGCCAGATG GCCAAGGCGG TCACCGACAT CGGTCAGGCG
GTCAACGAGC TGGCCAATTC CACTCAGTCC ATCGGCAGCG TCGCCGATGT GATCACGGCG
ATTGCCGAAC AGACCAACCT GCTGGCACTC AATGCCGCCA TCGAGGCCGC GCGGGCGGGT
GAGCAGGGCA GAGGGTTTGC CGTGGTGGCC GACGAGGTGC GCTCGCTGGC CTCGCGCACC
CGTCAGTCCA CCGAGCAGAT CCACCAGATC ATCGCCGACC TGCGCGCTGG CGCCGAACGC
GCAGTGGTCA CCGCGAGCAA GGGCGAAGAG ATTTCCCGTG GCAGCGTGCA GAGCGTGGAG
TCGGTACGCG ACGCACTGGA GGGTATCAGC TCGGCGGTGA CGCGCATCTC CGGCATGAGC
CAGCAGATGG CAGCCGCTGT CGAGCAGCAG AGCCACGTGG CGGAGGACAT CAGCCGGCAG
ATCACCCGCA TCGCCCAGCT GTCCGACCAC AGTGCCGGCC AGGCGCATCA GGGCGCGGCG
ATCAGCCGTG AGCTGGAGCA GATGGCCGAC TACCTGCACA GCCTGGCGGA GCGTTTCAAC
CGCTGA
 
Protein sequence
MRQNLPVTQR ERTFAADERL ISTTDLNSKI TYCNDAFVAI SGFTREELIG QPHNIVRHPD 
MPPSVFGHMW DTIKQGKPWM GIVKNRSKNG DFYWVSAYVT PVYEDGRMVG YESVRSLPSE
AQKRRAERLY ARLREGKPAV PHLQKWTYSL VRSWPLILAA ALILGLESVL DGGWLAAVTF
AIMLALGVYQ LYRTRALILR TLDEHPKAFT SELVALTYSD NRGAQALLDM AMISEEARLQ
TALTRLEDAG ENVKKRASQS ADLSRSGAEL LDQQRAETDQ SATAINEMAA TIQEVTHNVQ
NTSHAAEEAD RLARGGRDLA VGSLDSMRQM AKAVTDIGQA VNELANSTQS IGSVADVITA
IAEQTNLLAL NAAIEAARAG EQGRGFAVVA DEVRSLASRT RQSTEQIHQI IADLRAGAER
AVVTASKGEE ISRGSVQSVE SVRDALEGIS SAVTRISGMS QQMAAAVEQQ SHVAEDISRQ
ITRIAQLSDH SAGQAHQGAA ISRELEQMAD YLHSLAERFN R