Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pmen_1646 |
Symbol | |
ID | 5109620 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas mendocina ymp |
Kingdom | Bacteria |
Replicon accession | NC_009439 |
Strand | + |
Start bp | 1807780 |
End bp | 1809657 |
Gene Length | 1878 bp |
Protein Length | 625 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 640502874 |
Product | diguanylate cyclase with PAS/PAC sensor |
Protein accession | YP_001187142 |
Protein GI | 146306677 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG2199] FOG: GGDEF domain |
TIGRFAM ID | [TIGR00229] PAS domain S-box [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 30 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 40 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGAGGCTG GACGAGGCAG CGTGAAGACT GATCCTGCCG GCAGGACCCA GCCTGGCGAG GAACGATTAG ACGTCGTCAC ATTAATGGCG TATCAATATC ACGCAGCGCT CCTATCCTCG CCCAGCCAGA TGCCTATGCA GCCCCTGTGT TCGACCAATG CGCCCGTCAG CGCCAACGAT GAGCGGCTCG ACGGGCTCGT ACGCCTGCTC GGCCGCCACT TCGCGGTCGC GGTTGCCGTG CTCGTGGTCG GCGCGGGCAG CGCGCGGCGC ATTCTGGCCA GCGCCGCTCT CGGCGAACTG CAGCGGGCGC AGATCATCGA AGCCGAAGAC TGCGGTGCAA CGCGCCATGC GGCCGTTGAC CCAGGCCAAC AGGCGAGTCC GCCGGGCGTT GGCAGCCCTC TGCACCTGAT TGCGCGCTAC CCGCTGCTGG CGAGTCAGGG CCGCAGGCTC GGCGCCCTGT ACCTGCTCGA CGAACGGCCG CACGAACTGG ACGCCGGCCA GCGCCAGGCG CTGCAGGACT TCGCCGCCCT GGCGCTCGAG CTGCTGGTGC GGGAGGCGGA CGAAGCCCGG CAGCGCCATG AGGTCGCAGC CCTGCGCGAT AGCGAGCGGC GCATGGCGCT GGCCATCGCC GGCAGCGGAA CCGGCATCTG GGACCGCAAC GTCGCCACCG GCGAGATTCA TTACTCCAGC GGCTGGAAGG CGCTGCTGGG TTACGCCGAG CATGAGGTCG GCAATCGTAT CGAAGAGAGC TACACGCGGG TGCATCCCGC CGATCTGGAG TACGTCAAGG CGACCATCCA GGCGCATCTG GATCAACGCA CCGCGGCCTA CGAAGTCGAG CATCGCCTGC GCTGTCGCGA TGGCCAGTAC AAATGGGTGT GCAGCCGCGG CAAGGTGGTC GAGCGCGACA GCCAGGGCAG GCCGCTGCGC ATGATCGGCA CCACTACCGA CATCACCGCC ATGCGCATGC TGGCCGAGCG GGTGCGGCAG ACCGCGGACC TGATGACCGA TCTGACCAAC GAAGTTCCCG GCATGGTCTT CCAGTATCGA CGTGAGGCCA GCGGCGAGTC GTGCTTCACC TATGTCAGCG CCGGTGCCCA GGCCATCTGT GGGCTGAGCG CTGCGCAGCT GATGGAGGAT GCCCAGGCGC TGACGGCCAT CGTCCATCCC GAGGATCGCC GAGCCTTTAT CGAGTCCTTC GAACACTGCG CCGAACGACT GTCGCCCTGG CACCTGGAGT TTCGCGTGCA AGCGCCGGGG CGCGACATCG CCTGGTGTCA GGGCGAGGCC CGCCCGCGGC GCCAGGACGA TGGCAGCGTG CTCTGGCACG GGTTCATGAC CGACATCACC GCGCGCAAGC AGATCGAGGG CGAGCTGCAG GCTCTGGCCA CCACCGACTT TCTCACCCAG CTTGCCAACC GCCGGCACTT CATGGCTCAG CTCGAAGCCG TACTCGCGCG CCTGCAGCGC AGCCCCGGGC AGAGCGCGGC CATCCTGATG TTCGACCTGG ACCATTTCAA AGCCATCAAC GACCGCTGGG GCCACGACGT GGGCGACCAG GCGCTGCGCC ACTTCGCGGC CATCCTGCGT GGCCAGTTGC GCAAGACCGA CACGGCCGGA CGCCTCGGGG GCGAAGAGTT CGCCGTGGTT CTCAGCGAAG CCGATCTGCC AAAGGCCGTG CAGTTCGCCA CGCGCGTCCA GGGCGAACTG GCCAGAACGC CGATCCTGCC TGACGGTGAG CAGATCTTCC TCGCCGTCAG CGTCGGCATC TCATCGCTGA GTAGCTGCGA CACCAGCGTC GAGGCCGCCC TGTCACGCAG CGATATCGCC CTGTATTGCG CCAAGCGTGG CGGGCGCAAT CGCATCGAGC ATCGCTGA
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Protein sequence | MEAGRGSVKT DPAGRTQPGE ERLDVVTLMA YQYHAALLSS PSQMPMQPLC STNAPVSAND ERLDGLVRLL GRHFAVAVAV LVVGAGSARR ILASAALGEL QRAQIIEAED CGATRHAAVD PGQQASPPGV GSPLHLIARY PLLASQGRRL GALYLLDERP HELDAGQRQA LQDFAALALE LLVREADEAR QRHEVAALRD SERRMALAIA GSGTGIWDRN VATGEIHYSS GWKALLGYAE HEVGNRIEES YTRVHPADLE YVKATIQAHL DQRTAAYEVE HRLRCRDGQY KWVCSRGKVV ERDSQGRPLR MIGTTTDITA MRMLAERVRQ TADLMTDLTN EVPGMVFQYR REASGESCFT YVSAGAQAIC GLSAAQLMED AQALTAIVHP EDRRAFIESF EHCAERLSPW HLEFRVQAPG RDIAWCQGEA RPRRQDDGSV LWHGFMTDIT ARKQIEGELQ ALATTDFLTQ LANRRHFMAQ LEAVLARLQR SPGQSAAILM FDLDHFKAIN DRWGHDVGDQ ALRHFAAILR GQLRKTDTAG RLGGEEFAVV LSEADLPKAV QFATRVQGEL ARTPILPDGE QIFLAVSVGI SSLSSCDTSV EAALSRSDIA LYCAKRGGRN RIEHR
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