Gene Pmen_1646 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPmen_1646 
Symbol 
ID5109620 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas mendocina ymp 
KingdomBacteria 
Replicon accessionNC_009439 
Strand
Start bp1807780 
End bp1809657 
Gene Length1878 bp 
Protein Length625 aa 
Translation table11 
GC content67% 
IMG OID640502874 
Productdiguanylate cyclase with PAS/PAC sensor 
Protein accessionYP_001187142 
Protein GI146306677 
COG category[T] Signal transduction mechanisms 
COG ID[COG2199] FOG: GGDEF domain 
TIGRFAM ID[TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones30 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones40 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGAGGCTG GACGAGGCAG CGTGAAGACT GATCCTGCCG GCAGGACCCA GCCTGGCGAG 
GAACGATTAG ACGTCGTCAC ATTAATGGCG TATCAATATC ACGCAGCGCT CCTATCCTCG
CCCAGCCAGA TGCCTATGCA GCCCCTGTGT TCGACCAATG CGCCCGTCAG CGCCAACGAT
GAGCGGCTCG ACGGGCTCGT ACGCCTGCTC GGCCGCCACT TCGCGGTCGC GGTTGCCGTG
CTCGTGGTCG GCGCGGGCAG CGCGCGGCGC ATTCTGGCCA GCGCCGCTCT CGGCGAACTG
CAGCGGGCGC AGATCATCGA AGCCGAAGAC TGCGGTGCAA CGCGCCATGC GGCCGTTGAC
CCAGGCCAAC AGGCGAGTCC GCCGGGCGTT GGCAGCCCTC TGCACCTGAT TGCGCGCTAC
CCGCTGCTGG CGAGTCAGGG CCGCAGGCTC GGCGCCCTGT ACCTGCTCGA CGAACGGCCG
CACGAACTGG ACGCCGGCCA GCGCCAGGCG CTGCAGGACT TCGCCGCCCT GGCGCTCGAG
CTGCTGGTGC GGGAGGCGGA CGAAGCCCGG CAGCGCCATG AGGTCGCAGC CCTGCGCGAT
AGCGAGCGGC GCATGGCGCT GGCCATCGCC GGCAGCGGAA CCGGCATCTG GGACCGCAAC
GTCGCCACCG GCGAGATTCA TTACTCCAGC GGCTGGAAGG CGCTGCTGGG TTACGCCGAG
CATGAGGTCG GCAATCGTAT CGAAGAGAGC TACACGCGGG TGCATCCCGC CGATCTGGAG
TACGTCAAGG CGACCATCCA GGCGCATCTG GATCAACGCA CCGCGGCCTA CGAAGTCGAG
CATCGCCTGC GCTGTCGCGA TGGCCAGTAC AAATGGGTGT GCAGCCGCGG CAAGGTGGTC
GAGCGCGACA GCCAGGGCAG GCCGCTGCGC ATGATCGGCA CCACTACCGA CATCACCGCC
ATGCGCATGC TGGCCGAGCG GGTGCGGCAG ACCGCGGACC TGATGACCGA TCTGACCAAC
GAAGTTCCCG GCATGGTCTT CCAGTATCGA CGTGAGGCCA GCGGCGAGTC GTGCTTCACC
TATGTCAGCG CCGGTGCCCA GGCCATCTGT GGGCTGAGCG CTGCGCAGCT GATGGAGGAT
GCCCAGGCGC TGACGGCCAT CGTCCATCCC GAGGATCGCC GAGCCTTTAT CGAGTCCTTC
GAACACTGCG CCGAACGACT GTCGCCCTGG CACCTGGAGT TTCGCGTGCA AGCGCCGGGG
CGCGACATCG CCTGGTGTCA GGGCGAGGCC CGCCCGCGGC GCCAGGACGA TGGCAGCGTG
CTCTGGCACG GGTTCATGAC CGACATCACC GCGCGCAAGC AGATCGAGGG CGAGCTGCAG
GCTCTGGCCA CCACCGACTT TCTCACCCAG CTTGCCAACC GCCGGCACTT CATGGCTCAG
CTCGAAGCCG TACTCGCGCG CCTGCAGCGC AGCCCCGGGC AGAGCGCGGC CATCCTGATG
TTCGACCTGG ACCATTTCAA AGCCATCAAC GACCGCTGGG GCCACGACGT GGGCGACCAG
GCGCTGCGCC ACTTCGCGGC CATCCTGCGT GGCCAGTTGC GCAAGACCGA CACGGCCGGA
CGCCTCGGGG GCGAAGAGTT CGCCGTGGTT CTCAGCGAAG CCGATCTGCC AAAGGCCGTG
CAGTTCGCCA CGCGCGTCCA GGGCGAACTG GCCAGAACGC CGATCCTGCC TGACGGTGAG
CAGATCTTCC TCGCCGTCAG CGTCGGCATC TCATCGCTGA GTAGCTGCGA CACCAGCGTC
GAGGCCGCCC TGTCACGCAG CGATATCGCC CTGTATTGCG CCAAGCGTGG CGGGCGCAAT
CGCATCGAGC ATCGCTGA
 
Protein sequence
MEAGRGSVKT DPAGRTQPGE ERLDVVTLMA YQYHAALLSS PSQMPMQPLC STNAPVSAND 
ERLDGLVRLL GRHFAVAVAV LVVGAGSARR ILASAALGEL QRAQIIEAED CGATRHAAVD
PGQQASPPGV GSPLHLIARY PLLASQGRRL GALYLLDERP HELDAGQRQA LQDFAALALE
LLVREADEAR QRHEVAALRD SERRMALAIA GSGTGIWDRN VATGEIHYSS GWKALLGYAE
HEVGNRIEES YTRVHPADLE YVKATIQAHL DQRTAAYEVE HRLRCRDGQY KWVCSRGKVV
ERDSQGRPLR MIGTTTDITA MRMLAERVRQ TADLMTDLTN EVPGMVFQYR REASGESCFT
YVSAGAQAIC GLSAAQLMED AQALTAIVHP EDRRAFIESF EHCAERLSPW HLEFRVQAPG
RDIAWCQGEA RPRRQDDGSV LWHGFMTDIT ARKQIEGELQ ALATTDFLTQ LANRRHFMAQ
LEAVLARLQR SPGQSAAILM FDLDHFKAIN DRWGHDVGDQ ALRHFAAILR GQLRKTDTAG
RLGGEEFAVV LSEADLPKAV QFATRVQGEL ARTPILPDGE QIFLAVSVGI SSLSSCDTSV
EAALSRSDIA LYCAKRGGRN RIEHR