| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_1622 |
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| Symbol | |
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| ID | 5109280 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | + |
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| Start bp | 1787081 |
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| End bp | 1788061 |
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| Gene Length | 981 bp |
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| Protein Length | 326 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 640502850 |
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| Product | signal peptide peptidase SppA, 36K type |
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| Protein accession | YP_001187118 |
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| Protein GI | 146306653 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0616] Periplasmic serine proteases (ClpP class) |
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| TIGRFAM ID | [TIGR00706] signal peptide peptidase SppA, 36K type |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 0.37253 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 42 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCGGATG AGTGGAAGTC ATCGGCGAAG TCCGAGGGCG AGGATGCCAA AAGCTGGAAG
CTGCTGGAGA AGGCGCTGCT GTCCAGTGTG CAGGAGCAGC GTCGTTCGCG GCGTTGGGGG
ATTTTCTTCA AGCTGCTGAC GTTTCTTTAT CTGTTCGGGG CGTTGGCGCT GTTCTTGCCG
GCGCTCGATC TGAAGAAGGG GGCGTCGACC GGTGCGCATA CGGCCCTGAT CGAGATTCGC
GGGATGATCG CCGATCAGGA GCAGGCCAGT GCCGACAAGG TGGTGGGCAG TCTGCGTGCA
GCCTTCGAGG ACGCCAACAC CAAGGGTGTG ATCCTGCGTA TCAATAGCCC TGGCGGCAGT
CCGGTGCAGT CCGGCTACAT CTATGACGAG ATTCGCCGCT TGCGCGGCGA GCATCCGCAG
ATCAAGGTCT ACGCGGTGAT TACCGATCTG GGCGCGTCCG GGGCCTACTA CATCGCCAGT
GCGGCCGACG AGATCTACGC GGACAAGGCC AGTCTGGTCG GCTCCATCGG TGTTACGGCG
GCCAGCTTCG GCTTCGTCGA AACCATGGAG AAGCTCGGTG TCGAGCGTCG CGTCTACACC
TCGGGTGAGC ACAAGGCGTT TCTCGATCCG TTCCAGCCGC AGAAGGAAGA GGAAACCCGC
TTCTGGAAGG GGGTGCTGGA TACCACTCAC CGCCAGTTCA TCGAAAGCGT GAAGCAGGGG
CGCGGTGATC GTCTCAAGGC AGATGCGCAT CCCGAGCTGT TCTCGGGGTT GGTCTGGTCG
GGCGAGCAGG CGCTGCAGCT GGGGCTGGTC GATGCGCTGG GAAGTGCCAG TTACGTCGCT
CGCGAGGTGA TTGGCGAGAA GGAGATGGTC GACTTCACCG TGCGAGACAC GCCGTTCGAT
CGCTTCGCCA AGCGCCTGGG TACCAGCGTG GCTGATCGCA TTGCGTTGTG GATGGGTTTC
CAGGGGCCGA CGCTGCGCTG A
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| Protein sequence | MSDEWKSSAK SEGEDAKSWK LLEKALLSSV QEQRRSRRWG IFFKLLTFLY LFGALALFLP
ALDLKKGAST GAHTALIEIR GMIADQEQAS ADKVVGSLRA AFEDANTKGV ILRINSPGGS
PVQSGYIYDE IRRLRGEHPQ IKVYAVITDL GASGAYYIAS AADEIYADKA SLVGSIGVTA
ASFGFVETME KLGVERRVYT SGEHKAFLDP FQPQKEEETR FWKGVLDTTH RQFIESVKQG
RGDRLKADAH PELFSGLVWS GEQALQLGLV DALGSASYVA REVIGEKEMV DFTVRDTPFD
RFAKRLGTSV ADRIALWMGF QGPTLR
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