| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_1620 |
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| Symbol | |
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| ID | 5109278 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | + |
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| Start bp | 1785405 |
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| End bp | 1786403 |
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| Gene Length | 999 bp |
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| Protein Length | 332 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 640502848 |
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| Product | ribosomal large subunit pseudouridine synthase C |
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| Protein accession | YP_001187116 |
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| Protein GI | 146306651 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
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| TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.00181118 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 40 |
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| Fosmid unclonability p-value | 0.877955 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATTAAGT GCTTCAATTC CATAAAAAAT TGTTATGATT GCGCGATGAC TACTCCCGCC
TCTCCAACCT CCGGCGTTCA GCTGATCGAG GTTGCACCGG ATTTCGCCGG CCAACGCATC
GACAATTTCC TCAGGACACA GCTCAAGGGC GTGCCCAAGA CCCTGATTTA CCGCATTCTG
CGCAAAGGCG AGGTGCGGGT GAACAAGGGT CGGATCAAGC CCGAGTACAA GCTGCAGGCT
GGTGACATCG TGCGCGTGCC GCCGTTGCGC CTGGCCGAGC GCGACGAGCC CGAGCCGGTC
GCCCAGGGGC TGCTCGAGCG GCTCGAGGCG GCCATCGTCT ACGAAGACAA GGCACTGATC
GTGCTGAACA AGCCGGCCGG CATTGCCGTG CACGGCGGCA GCGGCCTGAA TTACGGGGTG
ATCGAGGCCT TCCGTCAGTT GCGTCCCGAT GCCAAGGATC TGGAGCTGGT GCACCGCCTG
GATCGCGACA CGTCCGGACT TTTGATGATC GCCAAGAAGC GCAGCATGCT GCGTCACCTG
CACGAGGCAT TGCGCGGCGA CGGCGTGGAC AAACGCTACA TGGCGCTGGT TCGCGGCCAC
TGGGCGACCG CCAAGAAGCA GGTCAACGCG CCGCTGCAGA AGAGCAACCT GCGCTCCGGC
GAGCGCATGG TCGAAGTCGA CGGCGAGGGC AAGGAGGCGC TGACGCTGTT CCGCGTGCTG
CGCCGCTTCG GCGACTTCGC CACGCTGGTC GAGGCCAAGC CGGTGACCGG CCGCACTCAT
CAGATTCGCG TGCACGCCAA GCATGCCGGG CACTGCATCG CTGGTGACTC CAAATACGGT
GATGACGACT TTACCCGCGA GATTCGCGAG CTGGGCGGCA AGCGCCTGTT CCTGCATGCC
TACGAATTGC ATGTGCCGCT GCCTGAGGGC GGTGTGCTGA AGCTCGAGGC GCCGGTGGAT
GACATGTGGG CCAAGACCCT GGAGAGGCTG AGTGCCTGA
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| Protein sequence | MIKCFNSIKN CYDCAMTTPA SPTSGVQLIE VAPDFAGQRI DNFLRTQLKG VPKTLIYRIL
RKGEVRVNKG RIKPEYKLQA GDIVRVPPLR LAERDEPEPV AQGLLERLEA AIVYEDKALI
VLNKPAGIAV HGGSGLNYGV IEAFRQLRPD AKDLELVHRL DRDTSGLLMI AKKRSMLRHL
HEALRGDGVD KRYMALVRGH WATAKKQVNA PLQKSNLRSG ERMVEVDGEG KEALTLFRVL
RRFGDFATLV EAKPVTGRTH QIRVHAKHAG HCIAGDSKYG DDDFTREIRE LGGKRLFLHA
YELHVPLPEG GVLKLEAPVD DMWAKTLERL SA
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