| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_1607 |
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| Symbol | |
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| ID | 5109265 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | + |
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| Start bp | 1771021 |
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| End bp | 1772268 |
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| Gene Length | 1248 bp |
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| Protein Length | 415 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 640502835 |
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| Product | LolC/E family lipoprotein releasing system, transmembrane protein |
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| Protein accession | YP_001187103 |
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| Protein GI | 146306638 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG4591] ABC-type transport system, involved in lipoprotein release, permease component |
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| TIGRFAM ID | [TIGR02212] lipoprotein releasing system, transmembrane protein, LolC/E family |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 0.345047 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 33 |
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| Fosmid unclonability p-value | 0.129769 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTCAGAC CTCTGTTCGT ATTCATCGGT ACGCGCTACA CGCGGGCCAA GCGTCGCAAC
CACTTCGTCT CCTTCATTTC CCTGACGTCC ATGCTCGGCC TCACCCTGGG GGTGATGGTG
ATGATCCTGG TGCTGTCGGT GATGAATGGC TTCGATCACG AGATGCGCAC CCGTGTGCTG
GGCATGATTC CGCATGCCAC GGTCGAGTCG GCCACCCCGG TCAGCGACTG GCCGGCACTG
GCGCGTCAGG TCGAACGTCA TCCGCGCGTC GAGGCGCTGG CCCCCTTCAC CCAGATGCAG
GGCTTGCTGA CGCACGACGG CAAGGTGCAG AAGGTGCTGA TCAATGCCAT CGATCCCGAG
CAGGAACGCA AGGTCTCGAT CATCGATGGC TTCTTCCAGC AAGGCGGGCT CGACAGCCTG
CAGCCCGGTG ATTTCGCCAT GATCATCGGT GACAAGGCAG CGGCCAAATT GGGCGTCAAG
CTCGGAGACA AGGTCACCTT CGTCGCCCCC GAGGTCACCG TGACCCCGGC CGGAATGTTT
CCGCGCCTCA AACGTTTTAC CGTGACCGGT ATCTTTCATG TCGGCGCCGG TGAGATCGAC
GGTGCCCTGG CCCTGGCCAA TATCAGCGAC CTGGCGCGTC TGCAGCGCTG GCAGCCGGAT
CAGGTACAGG GCCTGCGCCT GAAGTTCGAT GACCTGTTCC AGGCACCGCG CAGCGCCTGG
GAAATCGCCC AGACCCTCGA CGGCGATTTC TACGCCCGCG ACTGGACCCG CACGCATGGC
AATCTGTATC AGGCCATTCG CATGGAGAAG ACCATGATCG GCCTGCTACT GCTGCTGATC
GTTGCGGTAG CCGCCTTCAA CATCATCTCC ACCCTGGTGA TGGTGGTGAC CGACAAGAAG
GGCGATATCG CCATCCTGCG CACCCTTGGC GCCACGCCGC GGCAGATCAT GGCCATCTTC
ATGGTGCAGG GCACCGTGAT CGGCGTAGTC GGCACCTTCA TTGGCGCCGT CCTGGGGATT
CTCGCCGCGC TGAACATCAG CAGCCTGATT GCCGGCATCG AGCGGCTGCT GGGCATCAAG
TTTCTCAATG CCGATGTCTA TTTCATCGAT TACCTGCCCT CGCAATTGCA GACCGCCGAC
GTGGTCATGG TCTGCAGCGC AGCACTGCTG CTGAGCTTCT TTGCCACCCT GTACCCTGCC
TGGCGTGCTT CGTGTACCCA GCCTGCCGAG GCCCTGCGTT ATGAGTGA
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| Protein sequence | MFRPLFVFIG TRYTRAKRRN HFVSFISLTS MLGLTLGVMV MILVLSVMNG FDHEMRTRVL
GMIPHATVES ATPVSDWPAL ARQVERHPRV EALAPFTQMQ GLLTHDGKVQ KVLINAIDPE
QERKVSIIDG FFQQGGLDSL QPGDFAMIIG DKAAAKLGVK LGDKVTFVAP EVTVTPAGMF
PRLKRFTVTG IFHVGAGEID GALALANISD LARLQRWQPD QVQGLRLKFD DLFQAPRSAW
EIAQTLDGDF YARDWTRTHG NLYQAIRMEK TMIGLLLLLI VAVAAFNIIS TLVMVVTDKK
GDIAILRTLG ATPRQIMAIF MVQGTVIGVV GTFIGAVLGI LAALNISSLI AGIERLLGIK
FLNADVYFID YLPSQLQTAD VVMVCSAALL LSFFATLYPA WRASCTQPAE ALRYE
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