Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pmen_1593 |
Symbol | |
ID | 5109251 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas mendocina ymp |
Kingdom | Bacteria |
Replicon accession | NC_009439 |
Strand | - |
Start bp | 1754898 |
End bp | 1758335 |
Gene Length | 3438 bp |
Protein Length | 1145 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 640502821 |
Product | transcription-repair coupling factor |
Protein accession | YP_001187089 |
Protein GI | 146306624 |
COG category | [K] Transcription [L] Replication, recombination and repair |
COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 35 |
Fosmid unclonability p-value | 0.383279 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGTCCGTAC TGCGTCTTCC GTCTCTACCG GCCAGCGCCG GCAAACAGCA ATGGGGCAAT CTGCCTGGTG CCGCCCTGTC CCTGGCCATC GCCGAAGCGG CCAGCAATGC CGGACGCTTC ACTCTGGTGC TCACCGAAGG CAGCCAGAGC GCCGAGCGCC TGCAGGAAGA GCTGGCATTC TTCGCGCCGG ACCTGCCCGT GCTGCACTTT CCGGACTGGG AAACGCTGCC CTACGACGTC TTCTCGCCGC ACCAGGACAT CATTTCCCAG CGTATCGCCA CGCTCTACCG ACTGCCGCAG CTGAGCCGCG GCATCCTCGT AGTGCCGATC GCCACCGCCC TACACCGCCT GGCGCCCAAG CGCTTTCTGC TCGGCAGCAG TCTGGTGCTG GACGTGGGCC AGAAGCTCGA CGTCGAGCAG ATGCGTACGC GCCTGGAGGC CGCCGGCTAC CGCTGCGTCG ACACCGTGTA CGAGCACGGC GAGTTCGCCG TGCGCGGCGC GCTGATCGAC CTGTTCCCCA TGGGCAGCGA GGTGCCCTAC CGCATCGACC TGTTCGACGA TGAAATCGAA ACCCTGCGCA CCTTCGACCC GGAAAACCAG CGCTCGGTGG ACAAGGTGGA GTCGATCCGC CTGCTGCCGG CGCGCGAATT CCCGCTGGAG AAGAAGGCCG TCAGCGATTT TCGCGGGCGC TTTCGCGAGC GTTTCGACGT GGATTTCCGC CGCTGTCCGA TCTATCAGGA CCTTTCCAGC GGCATCACCC CGGCCGGTAT CGAGTACTAC CTGCCGCTGT TCTTCGAGGA AACCGGCACC CTGTTCGACT ACCTGCCGGG CGACACCCAG GTGTTCTCCC TGCCCGGCAT CGAAAAGGCC GCCGAGCACT TCTGGACCGA CGCGCGCAAC CGCTACGAGG ACCGCCGCGT CGACCCCGAG CGCCCACTGC TGCCGCCGGC CGATATCTTC CTGCCGGTGG AAGACTGCTT CGCCCGCCTG AAGAACTGGC CGCGCGTGGT GGTCAATCAG GACGACATCG AACCCGGTGT CGGCCAGACC CGCTTCGAGG CGCGCGCCCT GCCCGACCTG GCGATCCAGG CCAAGGCCGG CGAGCCGCTG GCGGCGCTGC GCCGCTTCAT CGAGGAATAT CAGGGCCGCG TGCTGTTCTG CGCCGAGTCG GCCGGGCGCC GCGAGGTGCT GCTGGAGCTG CTTGCCCGTC TCAAGCTCAA GCCCAAGGAA GTCGACGGCT GGCCGGCGTT CGTCGAAAGC GGCGAACGCC TGAACATCTG CATCGCGCCG CTGGACGAGG GCCTGCTGCT CGATGATCTG GCGCTGATCG CCGAAAGCCC GCTGTTCGGC CAGCGCGTCA TGCAGCGTCG TCGCCGCGAG AAGGGTCGCG ACGGTGGCGA CAACGTGATC AAGAACCTCA CCGAACTGCG CGAAGGCGCG CCGGTGGTGC ACATCGATCA CGGCGTCGGT CGCTACCTGG GCCTGGTGAC CATGGAGTTC GACGGCCAGG CCGCCGAATT CCTTGCCCTG CAGTACGCCG ACGAGGCCAA GCTCTACGTA CCGGTGGCCA GCCTGCACCT GATCGCCCGC TACAGCGGCA GCGACGATGC CCTGGCGCCG CTGCACCGCC TCGGCTCGGA AACCTGGCAG AAAGCCAAGC GCAAGGCCGC CGAACAGGTG CGCGACGTAG CCGCCGAACT GCTCGACATC TACGCCCGCC GCGCCGCCCG CGAGGGTTTC GCCTTTCAGG ACCCGGCCCT GGACTACGCC ACCTTCAGCG CCGGCTTCCC CTTCGAGGAA ACCCCGGATC AGCAGGCCGC CATCGACGCC GTGCGCGCCG ACATGCTGGC CGGCAAGCCG ATGGATCGCC TGGTCTGCGG CGACGTCGGC TTCGGCAAGA CCGAGGTGGC CATGCGCGCC GCCTTCATCG CCGTGCACAG CGGCAAGCAG GTAGCCGTGC TGGTGCCCAC CACCCTGCTC GCCCAGCAGC ACTACAACAG CTTCCGCGAC CGCTTCGCCG ACTGGCCGGT GAAGGTCGAG GTGATGAGCC GCTTCAAGAG CGCCAAGGAA GTCGAAGGCG CTGTGCAGCA ATTGGCCGAA GGCAAGGTGG ACATCGTCAT CGGCACCCAC AAGCTGCTGC AGGACGACGT CAAGTTTCAC AATCTGGGCC TGGTGATCAT CGACGAGGAG CACCGTTTCG GCGTGCGCCA GAAGGAGCAG CTCAAGGCCC TGCGCAGCGA GGTCGACATC CTCACCCTCA CCGCCACGCC GATTCCGCGC ACGCTGAACA TGGCCGTGGC CGGCATGCGC GACCTGTCGA TCATCGCCAC GCCGCCGGCG CGGCGCCTGT CGGTACGTAC CTTCGTCATG GAGGAGAACA AGCCGACCAT CAAGGAAGCG CTGCTGCGTG AGCTGCTGCG CGGCGGCCAG GTGTACTACC TGCACAACGA TGTGAAGACC ATCGACAAAT GTGCCAGTGA GCTGGCCGAA CTGGTGCCCG AGGCGCGCAT CGGCGTCGGC CACGGTCAGA TGCGCGAGCG CGAGCTGGAA CAGGTGATGA GCGACTTCTA CCACAAGCGC TTCAACGTGC TGGTGGCCTC GACCATCATC GAAACCGGCA TCGACGTGCC TAGCGCCAAC ACCATCATCA TCGAGCGTGC CGACAAGTTC GGCCTGGCCC AGCTGCACCA GCTGCGCGGC CGTGTCGGCC GCAGCCACCA CCAGGCCTAC GCCTACCTGC TCACGCCGCC GCGCAAGAGC ATGACCGACG ATGCGCAGAA GCGCCTGGAG GCCATCGCCG GTGCACAAGA CTTGGGCGCC GGCTTTATCC TCGCCACCCA TGACCTGGAA ATCCGCGGCG CCGGCGAGCT GCTCGGCGAT GGTCAGAGCG GGCAGATCCA GGCCGTCGGC TTCACCCTCT ACATGGAAAT GCTGGAAAGG GCCGTGAAGG CCATCCAGAA AGGCGAGCAG CCCAACCTCG ATCAGCCGCT GGGCGGCGGC CCGGAGATCA ACCTGCGCGT ACCGGCGCTG ATCCCCGAGG ACTACCTGCC TGACGTGCAT GCGCGCCTGA TCCTCTACAA GCGCATCGCC TCGGCCACCG ACGAGGACGG CCTGAAAGAG CTGCAGGTGG AGATGATCGA CCGCTTCGGC CTGCTGCCGG AGCCGACCAA GCACCTGATG CGCCTGACCC TGCTCAAGCT GCAGGCCGAC AAGCTGGGCA TCACCAAGGT GGACGCCGGC CCGCAGGGCG GCCGTATCGA GTTCGCCGCG GAAACCTGCG TCGACCCGCT GACCCTGATC AAGCTGATCC AGGCCCAACC GAAACGCTAC AAGTTCGAAG GCGCCACCGT CTTCAAGATC CAGGTGCCGA TGGAGCGCGC GGAAGAACGC TTCAACACCC TGGAAGCCCT GTTCGAGCGC CTCGCGCCCA CCACCTGA
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Protein sequence | MSVLRLPSLP ASAGKQQWGN LPGAALSLAI AEAASNAGRF TLVLTEGSQS AERLQEELAF FAPDLPVLHF PDWETLPYDV FSPHQDIISQ RIATLYRLPQ LSRGILVVPI ATALHRLAPK RFLLGSSLVL DVGQKLDVEQ MRTRLEAAGY RCVDTVYEHG EFAVRGALID LFPMGSEVPY RIDLFDDEIE TLRTFDPENQ RSVDKVESIR LLPAREFPLE KKAVSDFRGR FRERFDVDFR RCPIYQDLSS GITPAGIEYY LPLFFEETGT LFDYLPGDTQ VFSLPGIEKA AEHFWTDARN RYEDRRVDPE RPLLPPADIF LPVEDCFARL KNWPRVVVNQ DDIEPGVGQT RFEARALPDL AIQAKAGEPL AALRRFIEEY QGRVLFCAES AGRREVLLEL LARLKLKPKE VDGWPAFVES GERLNICIAP LDEGLLLDDL ALIAESPLFG QRVMQRRRRE KGRDGGDNVI KNLTELREGA PVVHIDHGVG RYLGLVTMEF DGQAAEFLAL QYADEAKLYV PVASLHLIAR YSGSDDALAP LHRLGSETWQ KAKRKAAEQV RDVAAELLDI YARRAAREGF AFQDPALDYA TFSAGFPFEE TPDQQAAIDA VRADMLAGKP MDRLVCGDVG FGKTEVAMRA AFIAVHSGKQ VAVLVPTTLL AQQHYNSFRD RFADWPVKVE VMSRFKSAKE VEGAVQQLAE GKVDIVIGTH KLLQDDVKFH NLGLVIIDEE HRFGVRQKEQ LKALRSEVDI LTLTATPIPR TLNMAVAGMR DLSIIATPPA RRLSVRTFVM EENKPTIKEA LLRELLRGGQ VYYLHNDVKT IDKCASELAE LVPEARIGVG HGQMRERELE QVMSDFYHKR FNVLVASTII ETGIDVPSAN TIIIERADKF GLAQLHQLRG RVGRSHHQAY AYLLTPPRKS MTDDAQKRLE AIAGAQDLGA GFILATHDLE IRGAGELLGD GQSGQIQAVG FTLYMEMLER AVKAIQKGEQ PNLDQPLGGG PEINLRVPAL IPEDYLPDVH ARLILYKRIA SATDEDGLKE LQVEMIDRFG LLPEPTKHLM RLTLLKLQAD KLGITKVDAG PQGGRIEFAA ETCVDPLTLI KLIQAQPKRY KFEGATVFKI QVPMERAEER FNTLEALFER LAPTT
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