| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_1529 |
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| Symbol | |
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| ID | 5108479 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | + |
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| Start bp | 1691143 |
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| End bp | 1692129 |
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| Gene Length | 987 bp |
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| Protein Length | 328 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 640502757 |
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| Product | short-chain dehydrogenase/reductase SDR |
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| Protein accession | YP_001187025 |
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| Protein GI | 146306560 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 29 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 36 |
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| Fosmid unclonability p-value | 0.392114 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGTGGGCG GCAGTCTTGC CTTGCAGGGG GTGCTGGGCG GCATACCGAG GTTCGCCTGG
GCCGACACCG CAACGGGCTG GCAGGCGACG GACATGCCGC CTTTGACCGG CAAGCGCATG
CTGGTCACCG GCGGCAGCAG CGGCATGGGC TTCGAGGATG CTCTGGCGCT CAGTCGCGCT
GGCGCGCAGG TGATCATCGC CGCGCGCAAC TCGCAGCGTG GCGCCGAGAG CATCGAACGC
ATTCGTGCCC AGGTGCCGCA GGCCCAGCTG CGTTTCGAAC AGCTGGACCT GGCCGACCTG
GCCTCGGTAC GCAGCCTGGC TCAGCGCCTG AATGCCGAGG GCGAGGTGCT GGACGTGCTG
ATCAACAATG CCGCGATCAT GGCGCCGCCG CAGCGCGGCG TGTCTCGCGA CGGTTTCGAG
ATGCAGCTGG CGACCAACTT CCTCGGCCAT TTCGCCCTGA CCGGTTTGCT CCTGTCGTCG
CTGCGCAAGT CATCCGATCC GCGCGTGGTG ACACTGGCGA GCATCGCGGT CAATCGTGGT
CGGATCGATT TCGACGACCT GCAGTCCGAG CGCAGCTACG ACCCCTATGC GGCTTACGCG
CAGTCGAAGC TGGCCTGTCT GATGATGGCC TTCGAACTGC AGCGGCGCAG TCTGGCCAAC
AACTGGGGCG TGCGCAGCAT CGCCGCGCAT CCTGGCGTGG CCGTCACCGA GCTGGTCGAG
CGCGGGCCGG GACTGGACAG CGAGTTCGCG CGCCAGTGGG CGAAGGATCG CGAGGTCTAT
CACTCGGCGG CGCAGGGCGC GCTGTCGTCA TTGTTCGCGG CGACGGCGGC CGAGGCCGAG
GGTGGTCGTT ACTACGGACC GACCGGCGAA GAGGAAAAGC GCGGCCCCCT GGGGCTGGCC
AAGGTACCGG CTGCCGCGGC GGATGCCGCT GATGCGGCGC GCCTGTGGTC GGTGGCCGAG
CGCCTGACGG GCGTGAAGTA CGGCTAA
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| Protein sequence | MVGGSLALQG VLGGIPRFAW ADTATGWQAT DMPPLTGKRM LVTGGSSGMG FEDALALSRA
GAQVIIAARN SQRGAESIER IRAQVPQAQL RFEQLDLADL ASVRSLAQRL NAEGEVLDVL
INNAAIMAPP QRGVSRDGFE MQLATNFLGH FALTGLLLSS LRKSSDPRVV TLASIAVNRG
RIDFDDLQSE RSYDPYAAYA QSKLACLMMA FELQRRSLAN NWGVRSIAAH PGVAVTELVE
RGPGLDSEFA RQWAKDREVY HSAAQGALSS LFAATAAEAE GGRYYGPTGE EEKRGPLGLA
KVPAAAADAA DAARLWSVAE RLTGVKYG
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