| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_1485 |
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| Symbol | |
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| ID | 5108436 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | - |
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| Start bp | 1644659 |
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| End bp | 1647502 |
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| Gene Length | 2844 bp |
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| Protein Length | 947 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 640502714 |
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| Product | ATP-dependent helicase HepA |
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| Protein accession | YP_001186982 |
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| Protein GI | 146306517 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG0553] Superfamily II DNA/RNA helicases, SNF2 family |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.810829 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 49 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCGCAGT ATCAACCGGG GCAACGCTGG ATCAGTGACA GCGAAGCGGA ATTGGGTCTG
GGAACCATCC TCGCCGAGGA CGGCCGCCTG CTCACCGTGC TCTACCCGGC CACCGGCGAA
ACCCGCCAGT ACGCCACGCG CAATGCCCCG CTGACCCGTG TGCGCTTCGC CCCGGGTGAC
GAGATCACCC ATTTCGAGGG CTGGAAGCTC ACCGTGCAGG AGGTCGAGGA TGTCGACGGC
CTGCTGGTCT ACCACGGCCT CGATGCCCAG CATAAACCGG TGACCATGCC GGAAACCCAG
CTGTCGAACT TCATCCAGTT CCGCCTGGCC AGCGACCGCC TGTTCGCCGG CCAGATCGAC
CCGCTGGCCT GGTTCGCCCT GCGTTATCAC AGTCTCGAGC ATAACAGCCG CCTGCTGCAG
TCGTCCCTCT GGGGCCTGGG TGGTGCGCGC GCCCAGCCGA TCGCCCACCA GCTGCACATC
GCCCGCGAAG TGGCCGACCG CATCGCACCG CGCGTGCTGC TGGCCGACGA AGTAGGTCTG
GGCAAGACCA TCGAAGCCGG CCTGGTGATC CATCGCCAGC TGCTCTCCGG CCGCGCCAGC
CGCGTGCTGA TCCTGGTGCC GGAAAACCTG CAGCACCAGT GGCTGGTGGA AATGCGCCGG
CGTTTCAACC TCGACGTCGC CCTGTTCGAC GCCGAGCGTT TCATGGAAAG CGACGCCAGC
AACCCCTTTG AGGATTGCCA GCTGGCGCTG GTCGCCCTGG AGTGGCTGAA GGACGACGAA
AAGGCGCAGG ACGCGCTGTT CGCCGCCGGC TGGGACCTGC TGGTGGTCGA CGAAGCCCAC
CACCTGGTCT GGCACCCGGA GCAGGCCAGC CCCGAATACT CGCTGGTCGA ACAACTGGCC
GAGGTCATCC CCGGCGTGCT GCTGCTCACC GCCACCCCGG AACAGCTCGG CCAGGACAGC
CACTTCGCCC GTCTGCGCCT GCTCGATCCC AATCGTTTCC ATGATCTGCA AGCCTTCCGC
GCCGAGAGCA GCCAGTACCG CCCGGTGGCC GAAGCGGTGC AGGAGCTGCT CGACCAGGGC
AAGCTCAGCG CCCAGGCACG CGATGCCATC GGCGGCTTCC TTGGCGATGA AGGCCGTGAG
CTGCTCGACG CCGTCGACAG CGGCGATGAC GACGCCCGCG CCCGCCTGGT GCGCGAACTG
CTGGATCGCC ACGGCACCGG CCGTCTGCTG TTCCGCAACA CCCGCGCCGC CGTGCAGGGC
TTCCCCGAGC GCGAGCTGCA CCCCTACCCG CTGCCGAGCC CGGACGAATA CCTCGAGCTG
CCGGTTGGCG AGCACGCCGA GCTGTACCCG GAAGTCAGCT ATCAGGCGCA GGAAGAGATC
GACGACGAGC AACGCTGGTG GCGCATCGAC CCGCGCGTCG AGTGGCTGAT CGACACCCTG
AAGATGCTCA AGAAATTCAA GGTGCTGGTG ATCTGCGCCC ATGCCGAGAC CGCGCTGGAT
CTGGAAGACG CCCTGCGCGT GCGTTCCGGC ATCCCCGCCA CGGTGTTCCA TGAAGGCATG
AGCATCCTCG AGCGCGACCG CGCGGCGGCC TATTTCGCCG ATGAGGAATT CGGCGCCCAG
GTGCTGATCT GCTCGGAAAT CGGCTCCGAA GGCCGCAACT TCCAGTTCGC CCATCATCTG
GTGCTGTTCG ACCTGCCGGC CCACCCGGAC CTGCTCGAGC AGCGTATCGG CCGTCTCGAC
CGTATCGGCC AGAAGCACCG CATCCAGCTG CACGTGCCGT ACCTGGAGAA CAGCCCGCAG
GAGCGCCTGT TCCAGTGGTA CCACCAGGCG CTGAACGCCT TCCTCGCCAC CTGCCCCACC
GGCAACGCCC TGCAGCACCA GTTCGGCCCA CGCCTGCTGC CGCTGCTGGA AAGCGGCGAC
GACGGCCAGT GGCAGCAACT GGTGGACGAA GCCACCGCCG AGCGCATTCG CCTGGAAGGC
GAACTGCACA GCGGCCGCGA CCGCCTGCTG GAGCTGAATT CCGGCGGCGC CGGCGAAGGT
GAGGCGCTGG TCGAGGCGAT CCTCGAGCAG GACGACCAGT TCACCCTGCC GATCTACATG
GAAGAGCTGT TCAACGCCTT CGGCATCGAC AGCGAAGACC ACTCCGACAA CGCCCTGATC
CTGCGCCCCA GCGAGAAGAT GCTCGATGCC AGCTTCCCGC TGGGCGACGA CGAAGCGGTG
ACCGTCACCT ACGACCGCGA GCAGGCTCTG GCCCGCGAGG ACATGCAGTT CCTCACCTGG
GAACACCCCA TGGTGCAGGG CGGCATGGAC CTGGTGCTGT CCGGCTCGAT GGGCAACACC
GCGGTGGCGC TGATCAAGAA CAAGGCGCTC AAACCCGGTA CCGTGCTGCT GGAGCTGCTT
TACGTCAGCG AAGTGGTCGG CCCACGCAAG CTGCAGCTGG GCCGCTTCCT TCCACCGGCT
GCGCTGCGTT GCCTGCTCGA CGCCAATGGC AACGACCTGG CGCCGAAGGT CGGTTTCGAG
ACGCTCAACG ATCAGCTCGA AAGCGTGCCA CGGGCCAGCG CCAACAAGTT CGTCCAGGCT
CAGCGCGATG TGCTGGCCAA GCAGATCAAT GACGCCGAAG CCAAGGTCAT GCCGCGCCAT
GTCGAGCGCG TGGCCGAGGC CAAGCGCCGC CTGATCGCCG AACTGGACGA GGAACTGGCC
CGTCTGATCG CCCTGCGCGC GGTCAACCCG AGCGTACGCG ACAGCGAGAT CGACGCCCTG
CGCGAGCAGC GCGAACAGAG CCTGGCGATG TTCGACAAGG CCGCCCTGCG CCTGGAAGCG
ATTCGCGTAT TGGTCGCGGG CTAA
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| Protein sequence | MAQYQPGQRW ISDSEAELGL GTILAEDGRL LTVLYPATGE TRQYATRNAP LTRVRFAPGD
EITHFEGWKL TVQEVEDVDG LLVYHGLDAQ HKPVTMPETQ LSNFIQFRLA SDRLFAGQID
PLAWFALRYH SLEHNSRLLQ SSLWGLGGAR AQPIAHQLHI AREVADRIAP RVLLADEVGL
GKTIEAGLVI HRQLLSGRAS RVLILVPENL QHQWLVEMRR RFNLDVALFD AERFMESDAS
NPFEDCQLAL VALEWLKDDE KAQDALFAAG WDLLVVDEAH HLVWHPEQAS PEYSLVEQLA
EVIPGVLLLT ATPEQLGQDS HFARLRLLDP NRFHDLQAFR AESSQYRPVA EAVQELLDQG
KLSAQARDAI GGFLGDEGRE LLDAVDSGDD DARARLVREL LDRHGTGRLL FRNTRAAVQG
FPERELHPYP LPSPDEYLEL PVGEHAELYP EVSYQAQEEI DDEQRWWRID PRVEWLIDTL
KMLKKFKVLV ICAHAETALD LEDALRVRSG IPATVFHEGM SILERDRAAA YFADEEFGAQ
VLICSEIGSE GRNFQFAHHL VLFDLPAHPD LLEQRIGRLD RIGQKHRIQL HVPYLENSPQ
ERLFQWYHQA LNAFLATCPT GNALQHQFGP RLLPLLESGD DGQWQQLVDE ATAERIRLEG
ELHSGRDRLL ELNSGGAGEG EALVEAILEQ DDQFTLPIYM EELFNAFGID SEDHSDNALI
LRPSEKMLDA SFPLGDDEAV TVTYDREQAL AREDMQFLTW EHPMVQGGMD LVLSGSMGNT
AVALIKNKAL KPGTVLLELL YVSEVVGPRK LQLGRFLPPA ALRCLLDANG NDLAPKVGFE
TLNDQLESVP RASANKFVQA QRDVLAKQIN DAEAKVMPRH VERVAEAKRR LIAELDEELA
RLIALRAVNP SVRDSEIDAL REQREQSLAM FDKAALRLEA IRVLVAG
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