Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pmen_1475 |
Symbol | rnc |
ID | 5109764 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas mendocina ymp |
Kingdom | Bacteria |
Replicon accession | NC_009439 |
Strand | + |
Start bp | 1636269 |
End bp | 1636958 |
Gene Length | 690 bp |
Protein Length | 229 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 640502704 |
Product | ribonuclease III |
Protein accession | YP_001186972 |
Protein GI | 146306507 |
COG category | [K] Transcription |
COG ID | [COG0571] dsRNA-specific ribonuclease |
TIGRFAM ID | [TIGR02191] ribonuclease III, bacterial |
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Plasmid Coverage information |
Num covering plasmid clones | 27 |
Plasmid unclonability p-value | 0.723705 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 59 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGAGTCCCA ATCTGTCCCG CCTCGAGCGC AAGCTCGGCC ATAGCTTCAA GGACCAGGAT CTGATGATCC TGGCCCTGAC CCATCGCAGT TTCGCCGGTC GCAATAACGA GCGTCTGGAA TTTCTCGGTG ATGCCATCCT CAACTTCGTT GCCGGCGAGG CGCTGTTCGA GCGCTTTCCG CAGGCCCGCG AAGGTCAGCT GTCGCGCCTG CGCGCCCGCC TAGTCAAGGG CGAGACCCTG GCCGTGCTGG CGCGCGGTTT CGAGCTGGGC GAATACCTGC GCCTGGGCTC CGGCGAGCTG AAGAGTGGCG GTTTTCGCCG CGAATCGATT CTCGCCGATG CGCTCGAGGC GCTGATCGGC GCCATCTATC TGGATGCCGG CATGGACGCA GCGCGAGAGC GCGTGCTGGA CTGGCTCAGT GGCGAGCTCG ATGGCCTGAC GCTGATCGAC ACCAACAAGG ATCCGAAGAC GCGCCTGCAG GAGTTCCTGC AGTCGCGCGC CTGCGAACTG CCCCGTTACG AGGTGGTGGA CATTCAGGGC GAGCCGCACT GCCGTACCTT CATGGTCGAG TGCCAGGTGG CCCTGCTCAA TGAAAAGACC CTGGGCCAGG GCGGCAGCCG GCGTATCGCC GAGCAGGTCG CCGCGGCTGC GGCGCTGATC GCCCTCGGGG TGGAGAACGG CAATGACTGA
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Protein sequence | MSPNLSRLER KLGHSFKDQD LMILALTHRS FAGRNNERLE FLGDAILNFV AGEALFERFP QAREGQLSRL RARLVKGETL AVLARGFELG EYLRLGSGEL KSGGFRRESI LADALEALIG AIYLDAGMDA ARERVLDWLS GELDGLTLID TNKDPKTRLQ EFLQSRACEL PRYEVVDIQG EPHCRTFMVE CQVALLNEKT LGQGGSRRIA EQVAAAAALI ALGVENGND
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