Gene Pmen_1475 details

Gene Information

• Locus tag: Pmen_1475
• Symbol: rnc
• ID: 5109764
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pseudomonas mendocina ymp
• Kingdom: Bacteria
• Replicon accession: NC_009439
• Strand: +
• Start bp: 1636269
• End bp: 1636958
• Gene Length: 690 bp
• Protein Length: 229 aa
• Translation table: 11
• GC content: 65%
• IMG OID: 640502704
• Product: ribonuclease III
• Protein accession: YP_001186972
• Protein GI: 146306507
• COG category: [K] Transcription
• COG ID: [COG0571] dsRNA-specific ribonuclease
• TIGRFAM ID: [TIGR02191] ribonuclease III, bacterial

Plasmid Coverage information

• Num covering plasmid clones: 27
• Plasmid unclonability p-value: 0.723705
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 59
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

GTGAGTCCCA ATCTGTCCCG CCTCGAGCGC AAGCTCGGCC ATAGCTTCAA GGACCAGGAT 
CTGATGATCC TGGCCCTGAC CCATCGCAGT TTCGCCGGTC GCAATAACGA GCGTCTGGAA 
TTTCTCGGTG ATGCCATCCT CAACTTCGTT GCCGGCGAGG CGCTGTTCGA GCGCTTTCCG 
CAGGCCCGCG AAGGTCAGCT GTCGCGCCTG CGCGCCCGCC TAGTCAAGGG CGAGACCCTG 
GCCGTGCTGG CGCGCGGTTT CGAGCTGGGC GAATACCTGC GCCTGGGCTC CGGCGAGCTG 
AAGAGTGGCG GTTTTCGCCG CGAATCGATT CTCGCCGATG CGCTCGAGGC GCTGATCGGC 
GCCATCTATC TGGATGCCGG CATGGACGCA GCGCGAGAGC GCGTGCTGGA CTGGCTCAGT 
GGCGAGCTCG ATGGCCTGAC GCTGATCGAC ACCAACAAGG ATCCGAAGAC GCGCCTGCAG 
GAGTTCCTGC AGTCGCGCGC CTGCGAACTG CCCCGTTACG AGGTGGTGGA CATTCAGGGC 
GAGCCGCACT GCCGTACCTT CATGGTCGAG TGCCAGGTGG CCCTGCTCAA TGAAAAGACC 
CTGGGCCAGG GCGGCAGCCG GCGTATCGCC GAGCAGGTCG CCGCGGCTGC GGCGCTGATC 
GCCCTCGGGG TGGAGAACGG CAATGACTGA 

 

Protein sequence

MSPNLSRLER KLGHSFKDQD LMILALTHRS FAGRNNERLE FLGDAILNFV AGEALFERFP 
QAREGQLSRL RARLVKGETL AVLARGFELG EYLRLGSGEL KSGGFRRESI LADALEALIG 
AIYLDAGMDA ARERVLDWLS GELDGLTLID TNKDPKTRLQ EFLQSRACEL PRYEVVDIQG 
EPHCRTFMVE CQVALLNEKT LGQGGSRRIA EQVAAAAALI ALGVENGND