| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_1453 |
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| Symbol | |
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| ID | 5109742 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | + |
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| Start bp | 1614880 |
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| End bp | 1615761 |
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| Gene Length | 882 bp |
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| Protein Length | 293 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 640502682 |
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| Product | pseudouridine synthase |
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| Protein accession | YP_001186950 |
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| Protein GI | 146306485 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
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| TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
| Num covering plasmid clones | 30 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 46 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCCAGTC CCGCCATGCG CCCCAGCACC CTGCACCTGC CCCAGGGCGA GTGGGCGACC
GTGCTCGATT GCCTGTGCGA TCACTTCCCG GCCATCGACC GTTCCACCTG GCTGCAACGC
ATGGAGCGTG GCCGCGTGCT GGATGCCGAG GGCGCGCCCA TCGGCCCGCA GCATCCCTAC
CAGGTCGGGC TCAAGGTGCG CTACTTCCGC GAGGTGCCGA ACGAGACGCC GATTCCCTTC
GAAGCGCGCG TGCTGTGGCA GGACGAGCAC CTGCTGGTGG CGGACAAGCC GCATTTCCTG
CCGGTGATGC CGGCCGGCGA GTACGTCGAG CAGACCCTGC TGGCGCGCCT GATCAAGCGC
ACCGGCAACC CCGACCTGGT GCCGATCCAT CGCATCGACC GCCTCACCGC CGGGCTGGTG
CTGTTCTCGG TCGCCCCAAG CAGCCGCGGC CAGTATCAGG CGCTGTTCCG CCAGCGTGCG
GTGGAAAAGC GCTACGAGGC CATCGCTCCG GCGCTGCCGC AGCTGCAGTT TCCCCATGTG
CATCGCTCGC GCATGGTGGA AGGCGAGCCG TTCTTTCGCA TGCAGGAAGT GGCGGGCGAG
GCCAACAGCG AGACGCGCAT CGAGGTGCTG GAGCGTCGTG GCGAGTTGTG GCGCTATGGG
CTTTCGCCGG TGACCGGCAG GAAGCATCAG CTGCGCGTGC ATCTGGCCGG CCTCGGCGCG
CCCATCGTCG GCGACGATTT CTATCCCGAG CTGCACGAGA GTCGCAACCA GCCGGACGAT
TACGCCAAGC CGCTCAAACT GCTGGCACGC GGCCTGCGTT TCGTCGATCC GCTCAGCGGC
CAGTTGCGCG AGTTCGAGAG CCAATTGCAG TTGCAGTGGT AG
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| Protein sequence | MPSPAMRPST LHLPQGEWAT VLDCLCDHFP AIDRSTWLQR MERGRVLDAE GAPIGPQHPY
QVGLKVRYFR EVPNETPIPF EARVLWQDEH LLVADKPHFL PVMPAGEYVE QTLLARLIKR
TGNPDLVPIH RIDRLTAGLV LFSVAPSSRG QYQALFRQRA VEKRYEAIAP ALPQLQFPHV
HRSRMVEGEP FFRMQEVAGE ANSETRIEVL ERRGELWRYG LSPVTGRKHQ LRVHLAGLGA
PIVGDDFYPE LHESRNQPDD YAKPLKLLAR GLRFVDPLSG QLREFESQLQ LQW
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