| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_1401 |
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| Symbol | |
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| ID | 5109690 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | - |
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| Start bp | 1563069 |
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| End bp | 1564100 |
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| Gene Length | 1032 bp |
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| Protein Length | 343 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 640502630 |
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| Product | electron transport complex, RnfABCDGE type, D subunit |
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| Protein accession | YP_001186898 |
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| Protein GI | 146306433 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG4658] Predicted NADH:ubiquinone oxidoreductase, subunit RnfD |
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| TIGRFAM ID | [TIGR01946] electron transport complex, RnfABCDGE type, D subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 29 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 40 |
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| Fosmid unclonability p-value | 0.875463 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCCCTGC CCCGCATCAC CTCGCCCCAC GCCAAGGGCA GCAACCGTAC CCAGCAGGTC
ATGCTGCAGG TGCTGCTGGC CACCGTGCCG GGCATTCTCG CCCTGACCTG GCTGTTCGGC
GCCGGCACGC TGTACAACCT GGCCCTGGCC AGCCTGTTCG CCCTGGCCTT CGAGGCGGCG
ATCCTGGCCG CGCGCCAACG TCCGCTGGCC TTCTTTCTCA AGGACTACAG CGCGCTGGTC
ACCGCCGTGC TGCTGGCCCT GGCCCTGCCA CCCTATGCAC CCTGGTGGCT GACCCTGATC
GCCTGCGGCT TCGCCATCGT CTTCGGCAAG CAGCTCTATG GTGGCCTCGG GCAGAACCCC
TTCAACCCGG CCATGCTCGG CTATGTGGTG GTGCTGATCT CCTTCCCGGT GGAGATGACC
AGTTGGCCCG CGCCGCACGG CGTCGCTGCG CTGGACGGCA TCAAGCACAT ACTCGGCATC
GCCAGCCTGC CCGATGGCTG GGCCCAGGCC ACCGCGCTGG ACGCGCTGAA AGTGAACAAG
AGCCTGACCA TCGACGAGCT GCGCGCCGCC AACCCGGCCT TCGGCCATTT CGGCGGTGCC
GGCAGCGAGG CGGTCAACCT GGCGTTCCTC GCCGGCGGCC TGTACCTGCT GCACAAGCGC
CTGATCACCT GGCACGCACC AGTGGGCATG CTCGCTGCGC TGTTCGTCAT GAGCCTGCTG
TTCTGGAACG GCAGCGGCTC GGATTCCAAC GGTTCGCCGC TGTTCCACCT GCTGACCGGC
GCCACCATGC TCGGCGCCTT CTTCATCGTC ACCGATCCGG TTTCCGGCGC GACCAGCAAT
CGCGGGCGTC TGGTGTTCGG CATCGGCGTC GGCGTACTGG TCTACGTGAT CCGCGCCTGG
GGCGGCTACC CGGACGCGGT GGCCTTCGCC GTGCTGCTGA TGAACCTGGC GGCGCCGACC
ATCGACTACT ACACCCGGCC GCGTAGCTAC GGCCACCGCA AGCCCAACAG CGGCTTCAAG
CTGGGAGAAT GA
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| Protein sequence | MALPRITSPH AKGSNRTQQV MLQVLLATVP GILALTWLFG AGTLYNLALA SLFALAFEAA
ILAARQRPLA FFLKDYSALV TAVLLALALP PYAPWWLTLI ACGFAIVFGK QLYGGLGQNP
FNPAMLGYVV VLISFPVEMT SWPAPHGVAA LDGIKHILGI ASLPDGWAQA TALDALKVNK
SLTIDELRAA NPAFGHFGGA GSEAVNLAFL AGGLYLLHKR LITWHAPVGM LAALFVMSLL
FWNGSGSDSN GSPLFHLLTG ATMLGAFFIV TDPVSGATSN RGRLVFGIGV GVLVYVIRAW
GGYPDAVAFA VLLMNLAAPT IDYYTRPRSY GHRKPNSGFK LGE
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