Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pmen_1353 |
Symbol | |
ID | 5109406 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas mendocina ymp |
Kingdom | Bacteria |
Replicon accession | NC_009439 |
Strand | - |
Start bp | 1513295 |
End bp | 1514938 |
Gene Length | 1644 bp |
Protein Length | 547 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 640502581 |
Product | methyl-accepting chemotaxis sensory transducer |
Protein accession | YP_001186850 |
Protein GI | 146306385 |
COG category | [N] Cell motility [T] Signal transduction mechanisms |
COG ID | [COG0840] Methyl-accepting chemotaxis protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 0.769572 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 41 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAATTCCC CCATGAGTAT TGCCCAGCGT CTGAGCTTGG GCTTTGGCCT GGTGCTGTCG CTAATGGTTC TTATCGCGCT CATCGGTGTG CAGCGCGTCG GTTTCATCGA CGAGACGCTG ACCGCTGTCA GCGACGGCGC CGCGCTGAAG CAGCGCTACG CCATCAACTT TCGTGGCAGC GTGCATGATC GCGCCATCGC CATTCGCGAT GCGGTACTGG ATGGCGATGG CGCGGCGTTG GCCGGGCACC TGGGCGAGAT CCAGCGTCTC GATCGCTTCT ATCAGGAATC GGCGCAAGCC ATGGAAACGC TGCTGGCGAA GCAGGCGCCC ACGGCAGCGG AGCAGCGCCT TCTGGATAAC ATCAAGACCA TCGAGCGCAG CACGCTGGCG CTGACCGAGC AGTTGATCAG CCTGCGCCGC ACCGGCAATG AAGCGGCGCT GCCGCTGTTG ATGGAGCGGG TCTCTCCGGC TTACAGCGAG TGGCTCAAGC ACATCAATGC CTTTATCGAT CACCAGGAAG AGGCCATCAG CCAGGATTTG GGCGAGGTGC GCGAGGTGGC CGGTGGCTTC CGCTTGCTGA TTCTGCTGGT CACGGGCGCT GCCTTGCTGC TGAGCGTGGG CATCAGCCTG GTGATCATCA ACACGTTGAA GTCGACACTG GGCGCCGAGC CACACCGGGT CGCGCAGGTG ATTCAGCAGT TGGCCAAGGG TGAGCTCGAT CAACAGATCG AGACGCAGTA TCCGAATAGC GTGATGGCGG ATCTGCAGAA CATGGTGCGC CACCTGAGCG ACACCATCGC GCAGGTACGC AGTGCGGCAA CGGAGCTGAC TCACTCGTCG GATCAGTTGA TGTCCACTTC CGACAGCAAC AACCAGCAGA TTCGCCTGCA ATCGAGCGAG GCCGAGCAGA TGGCCACGGC GATCAATCAG ATGGCCGCCA CGGTCAGCGA AGTGGCCAAC TATGCCGCCA GCGCAGCAGC CGCCACACGC AACGCCGGCG GTGAGGTGAC CATTGGCAAT CGCGTGGTGA ACGAGACGGC AAACGCCATC CAGACGTTGG CGCGCACCCT TGAGAGCGCA ACGCAAAGCG TGCAGCAGGT TTCCAGCGAC AGCGAGAGCA TCGAAAAGAT CATCGAGGTG ATCACCTCCA TCGCCGAACA GACCAACCTG CTGGCGCTCA ACGCGGCCAT CGAGGCTGCC CGAGCGGGTG AGCACGGACG CGGCTTTGCC GTGGTGGCGG ACGAGGTACG TTCTCTGGCA ACCCGCACCC AGGACTCGAC ACGGGAAATT CGCGGCATGA TCGCCAAGCT CCAGGAAGGC GCCGGCAAGG CCGCAGAGGT GATGCTCGAG AGCCGTCAAC TGGCGCAGAA GACCGTCGAG CAGACCGTCC TGGCAGAACA AGCGCTGAGC AAGATCAGTG ACGAAGTGAC CGCGATCAAC GACATGAACG CACAGATCGC CAGCGCCTCG GAACAGCAAA GCGCGGTCGC CGAGGAGGTC AACCAGAACA TCAGCCGCAT CCACAACGCG ACCCTGGAAA CCTCCGCCGG CTCGGAGCAG GTGGCGGCCT CCAGCCAGGA GCTGGCAACC CTGGCGAACC GCCTGACCGA CAAGGTGAGC TTCTTCAAGG TGCGGGCAGC CTGA
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Protein sequence | MNSPMSIAQR LSLGFGLVLS LMVLIALIGV QRVGFIDETL TAVSDGAALK QRYAINFRGS VHDRAIAIRD AVLDGDGAAL AGHLGEIQRL DRFYQESAQA METLLAKQAP TAAEQRLLDN IKTIERSTLA LTEQLISLRR TGNEAALPLL MERVSPAYSE WLKHINAFID HQEEAISQDL GEVREVAGGF RLLILLVTGA ALLLSVGISL VIINTLKSTL GAEPHRVAQV IQQLAKGELD QQIETQYPNS VMADLQNMVR HLSDTIAQVR SAATELTHSS DQLMSTSDSN NQQIRLQSSE AEQMATAINQ MAATVSEVAN YAASAAAATR NAGGEVTIGN RVVNETANAI QTLARTLESA TQSVQQVSSD SESIEKIIEV ITSIAEQTNL LALNAAIEAA RAGEHGRGFA VVADEVRSLA TRTQDSTREI RGMIAKLQEG AGKAAEVMLE SRQLAQKTVE QTVLAEQALS KISDEVTAIN DMNAQIASAS EQQSAVAEEV NQNISRIHNA TLETSAGSEQ VAASSQELAT LANRLTDKVS FFKVRAA
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