| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_1327 |
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| Symbol | |
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| ID | 5109380 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | - |
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| Start bp | 1487697 |
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| End bp | 1488350 |
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| Gene Length | 654 bp |
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| Protein Length | 217 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 640502555 |
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| Product | HAD family hydrolase |
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| Protein accession | YP_001186824 |
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| Protein GI | 146306359 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0560] Phosphoserine phosphatase |
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| TIGRFAM ID | [TIGR01488] Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like
[TIGR01490] HAD-superfamily subfamily IB hydrolase, TIGR01490 |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.00757114 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 44 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGCTCTGG CGATCTTCGA CCTCGACGAA ACCCTCATCC ACGGCGACTG CGCCAGTCTG
TGGGCAGTGG AAATGACCAA GCTGGGCTGG GCCGATGGCG AAGCCTTCAT CGCCCGCGAA
CAGGAGCTGA TGCACCTGTA TGCGGCGGGC GAGCTGGCCA TGGAGGACTA CATGGCCTTC
ACCCTGGCGC CACTGGTGGG GCGCACACCC GAGGAGGTCG CCCATGTGGT CGAGCCCTTC
GTCGAGGACG TGATCGAGCC GATCTTCTAC AGCGACGCGA GCCGCACCCT GGCCGCGCAC
CGCGAAGCCG GTGACCGCCT GCTGGTGATC TCCGCCTCGG CGCATTTTCT GGTCAGCGCC
ATTGCCGAGC GCTTCGGCAT CGACGAGGTA TTGGCCATCG ACCTGGAGCT GCAACACGGC
TTCTACAGCG GCCGCACCCA GGGCGTACTG ACCTACCGCG AAGGCAAAGT CACCCGCCTG
CACACCTGGC TCGCCGAGCA GAACGAGAAC CTGGCCGGCG CCAGCTTCTA CTCCGACTCG
CGCAACGACC TGCCGCTGCT GCAACTGGTG GACAGGCCGT TCGCGGTCAA CCCCGACCCG
ACCCTGCGCG CCCACGCCGA ACAGGCCGGC TGGCCGATTC TCAACTGGCG CTGA
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| Protein sequence | MALAIFDLDE TLIHGDCASL WAVEMTKLGW ADGEAFIARE QELMHLYAAG ELAMEDYMAF
TLAPLVGRTP EEVAHVVEPF VEDVIEPIFY SDASRTLAAH REAGDRLLVI SASAHFLVSA
IAERFGIDEV LAIDLELQHG FYSGRTQGVL TYREGKVTRL HTWLAEQNEN LAGASFYSDS
RNDLPLLQLV DRPFAVNPDP TLRAHAEQAG WPILNWR
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