Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pmen_1321 |
Symbol | |
ID | 5109374 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas mendocina ymp |
Kingdom | Bacteria |
Replicon accession | NC_009439 |
Strand | - |
Start bp | 1480016 |
End bp | 1482130 |
Gene Length | 2115 bp |
Protein Length | 704 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 640502549 |
Product | carboxyl-terminal protease |
Protein accession | YP_001186818 |
Protein GI | 146306353 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0793] Periplasmic protease |
TIGRFAM ID | [TIGR00225] C-terminal peptidase (prc) |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 0.184977 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 41 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGCGTTATC ACCTGCCACT ACGTCGAATC AGCATGAAGC GCTCCCTTGC AAGTACCGCC CTCGCCCTCG TACTCGGCTT CAGTGCCCTG CCGTTGGCGG CCAAGACCAC CACTGCTCCT GGCTGGGACT ACCTGCAGCC GGATCGCGAG CAAGTGATTG CCAGCCTCAA CGTAGTGGAA TTGCTCAGAC GCCATCACTA CAACAAGCCG CCGCTGAATG ACGAGCGCTC GATTCAGATC TACGACAACT ACCTGAAGTT GCTCGATCCG ACGCGCAGTT ATTTCACCGC CGGCGACATC GCCGAATTCA ACCAGTGGCG AACCAAGTTC GATGATCTGC TCAAGAGCGG CGATCTCGAA CCAGGCTTCG CCATCTATCG CCGCCACCTG ACCCGCCTGC AGGAGCGCCT GGACTATGCC CTGGCAGAGC TCGGCAAGGG CGTCGACAAG ATCGACTTCA CCATTGATGA AGAGCTGCAG GTCGACCGCG AGAAAGCCCC CTGGGCCAAG GATCGCGCCG AACTCGACGA GCTCTGGCGC AAACGCCTCA AGGACGAAGT GCTGCGGCTG AAGATTGCCG GCAAGGAAAC CAAGGACATC CAGGAACTGC TGACCAAGCG TTACCGGAAC CAGCTGGCGC GTCTCAAGCA GACCCGTGGC GAAGACGTGT TCCAGGCCTA CATCAACGCC TTCGCCACCA CCTACGATCC GCACACCACC TACCTGTCGC CGGACAATGC GGAAAACTTC GACATCAACA TGAGCCTGTC GCTGGAAGGC ATCGGCGCCG TGCTGCAGAG CGACAACGAG CACGTCAAGG TCGTACGCCT GGTACCGGCC GGCCCGGCGG AGAAGAGCAA GCAGATCGCC CCGGCGGACA AGATCGTCGG TGTCGCCCAG GGTAACGGCG AGATGGTCGA CGTGATCGGC TGGCGCCTGG ACGAAGTGGT CAAGCTGATC CGCGGCCCGA AAGGCTCCAC CGTGCGCCTG GAAGTGATTC CGGCCAGCAA CCCGCCCAGC GACCAGACCA GCAAGGTGGT CACCATCACC CGTGAGGCGG TCAAGCTGGA AGAGCAGGCG GCCAAGAAGA AGGTCCTGGA ACTCAAGCAC GAGGGCCGCG ACTACAAGCT CGGGGTCATC GAGCTGCCGG CCTTCTATCT CGACTTCAAG GCTTTCCGCG CTGGCGACCC GAACTACAAG AGCACCACCC GCGACGTCAA ACGCCTGCTC GACGAGCTGC AGGCCGAGAA GGTCGACGGC GTGGTGATCG ACCTGCGCAA CAACGGTGGC GGCTCGCTGC AGGAAGCCAC CGAGCTGACC AGTCTGTTCA TTGAACAGGG CCCCACCGTG CTGGTGCGCA ATGCCGACGG CCGTGTCGAC GTGCTCGCCG ACGACAGCAA AGGCGTCTAC TACAGCGGTC CCCTGGCCGT GCTGGTCAAC CGCCTGTCCG CCTCGGCCTC GGAGATCTTC GCCGGCGCCA TGCAGGACTA TCACCGCGCG CTGATTCTCG GCGGCCAGAC CTTCGGCAAG GGCACGGTGC AGACCATCCA GCCGCTCAAC CACGGCGAGC TGAAACTGAC CCTGGCCAAG TTCTACCGCG TCTCGGGGCA AAGCACGCAG AACCAGGGCG TGATTCCCGA CATCCTCTAC CCCGACGTGA TGGACACCAA GGACATCGGC GAAAGCGCGC TGCCTGCCGC CCTGCCCTGG GACAGCATCC GCCCGGCGAT CAAGCCCGAA CTCGACCCGA TCAAGCCCTT CCTGAGCGAA CTGAAAGTGC GCCATGACCG GCGCACGGCC AATGATCCGG ACTTCGTCTT CACCCGCGAC CGCCTGAGCC TGGCCAAGAA GCTGATGGCC GAAACCACCG TCAGCCTCAA CGAGCAGACG CGTCGTGCCC GCCAGGCCGA GGTGGAAGCC AAGCAGCTGA AGCTGGAGAA CAACCGCCGG CTGGCCAAAG GCGAAGATCC GCTCAAGGAA CTGCAGAAGG AAGACGAGGA CGCCCTGCCG CTGGAAGACG GCAAGAGCAC GCCGGAAGAT GACGCCTACC TGGCCGAATC CGGGCGCATC CTGCTCGACT ATCTGGGACT CAACCCCTCA CTCGCGCTGC ACTGA
|
Protein sequence | MRYHLPLRRI SMKRSLASTA LALVLGFSAL PLAAKTTTAP GWDYLQPDRE QVIASLNVVE LLRRHHYNKP PLNDERSIQI YDNYLKLLDP TRSYFTAGDI AEFNQWRTKF DDLLKSGDLE PGFAIYRRHL TRLQERLDYA LAELGKGVDK IDFTIDEELQ VDREKAPWAK DRAELDELWR KRLKDEVLRL KIAGKETKDI QELLTKRYRN QLARLKQTRG EDVFQAYINA FATTYDPHTT YLSPDNAENF DINMSLSLEG IGAVLQSDNE HVKVVRLVPA GPAEKSKQIA PADKIVGVAQ GNGEMVDVIG WRLDEVVKLI RGPKGSTVRL EVIPASNPPS DQTSKVVTIT REAVKLEEQA AKKKVLELKH EGRDYKLGVI ELPAFYLDFK AFRAGDPNYK STTRDVKRLL DELQAEKVDG VVIDLRNNGG GSLQEATELT SLFIEQGPTV LVRNADGRVD VLADDSKGVY YSGPLAVLVN RLSASASEIF AGAMQDYHRA LILGGQTFGK GTVQTIQPLN HGELKLTLAK FYRVSGQSTQ NQGVIPDILY PDVMDTKDIG ESALPAALPW DSIRPAIKPE LDPIKPFLSE LKVRHDRRTA NDPDFVFTRD RLSLAKKLMA ETTVSLNEQT RRARQAEVEA KQLKLENNRR LAKGEDPLKE LQKEDEDALP LEDGKSTPED DAYLAESGRI LLDYLGLNPS LALH
|
| |