| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_1277 |
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| Symbol | tolB |
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| ID | 5109093 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | + |
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| Start bp | 1436695 |
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| End bp | 1437993 |
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| Gene Length | 1299 bp |
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| Protein Length | 432 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 640502502 |
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| Product | translocation protein TolB |
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| Protein accession | YP_001186774 |
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| Protein GI | 146306309 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0823] Periplasmic component of the Tol biopolymer transport system |
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| TIGRFAM ID | [TIGR02800] tol-pal system beta propeller repeat protein TolB |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 0.154906 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 37 |
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| Fosmid unclonability p-value | 0.476044 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGAATACCC TGATTCGTAT CGCCCTGCTG GGGCTGGTCA TGCTGGTCGG CAGCGTCCAG
GCGGCCGACC CGCTGGTGAT CTCTCACGGC GCCGACCGCG CCACTCCGAT CGCCGTGGTG
CCGTTCGGCT GGCAGGGCGG CTCGGTGCTG CCCGAGGACA TGTCGCAGAT CATCGGCAAC
GACCTGCGCA ACTCCGGCTA CTTCGAGCCC ATCCCGCGGC AGAACATGAT CAGCCTGCCG
ACCCAGGCCA GCGAAGTCAT CTACCGCGAC TGGAAGGCCC TCGGCGCGCA GTACGTGCTG
GTCGGCAACA TCGTCCCCAA CGGCGGCCGC CTGCAGGTGC AGTACGCGCT GTTCAACGTC
AACACCGAAC AGCAGGTCAT GACCGGCAAC GTCGGTGGCG GCACCGATCA GCTGCGCGAC
ATGGCTCACC ATATCGCCGA CCAGTCGTTC GAGAAGCTCA CCGGCGTCAA GGGTGCGTTC
TCCACGCGCC TGCTCTACGT CACGGCCGAG CGCATGGGCG CCAACAATAC CCGCTACACC
CTGCAGCGCT CCGACTACGA CGGCGCTCGC GCCGTGACCC TGCTGCAGTC GCGTGAGCCG
ATCCTGTCGC CGTCCTTCGC TCCCGATGGC CGCCGCATCG CCTACGTGTC GTTCGAGCAG
CGTCGTCCGC GCATCTTCGT GCAGCACATC GATACCGGCC GCCGCGAGCA GATCACCAAC
TTCGAAGGCC TCAACGGCGC GCCGGCCTGG TCGCCGGACG GCAATCGCCT GGCTTTCGTG
CTGTCGCGTG ACGGCAACCC GGAAATCTAC GTGATGGACA TGGGCAGCCG GCAGATGCGC
CGCATCACCA ACCATTACGC CATTGATACC GAACCCTTCT GGGGCAAGGA CGGTCAGACT
CTGTACTTCA CCTCGGATCG CGCGGGCCGT CCGCAGATCT ACAAGACCAA CATCAATAGC
GGGGCAGTGG AGCGAGTGAC CTTCGTCGGT AACTACAACG CCAACCCGAA ATTGTCGGCT
GATGAGAAGA CCCTGGTGAT GATCCATCGT CAGGACGGTT TCACCGTGTT CAAGGTGGCT
GCGCAGGACC TGGAAACCAA CCGTCTGCGC ATACTTTCAG ACACAAGTTT GGATGAGTCG
CCCACTGTTG CGCCCAATGG CACCATGCTA ATCTACGCCA CCCGCCAGCA GGGCCGGGGA
GTCTTGATGT TGGCGTCCAC CAATGGACGC GTGAGGCTCC CTCTTCCTAC CGCTCAAGGC
GAAGTTCGAG AGCCTTCTTG GTCCCCTTAC CTGAACTGA
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| Protein sequence | MNTLIRIALL GLVMLVGSVQ AADPLVISHG ADRATPIAVV PFGWQGGSVL PEDMSQIIGN
DLRNSGYFEP IPRQNMISLP TQASEVIYRD WKALGAQYVL VGNIVPNGGR LQVQYALFNV
NTEQQVMTGN VGGGTDQLRD MAHHIADQSF EKLTGVKGAF STRLLYVTAE RMGANNTRYT
LQRSDYDGAR AVTLLQSREP ILSPSFAPDG RRIAYVSFEQ RRPRIFVQHI DTGRREQITN
FEGLNGAPAW SPDGNRLAFV LSRDGNPEIY VMDMGSRQMR RITNHYAIDT EPFWGKDGQT
LYFTSDRAGR PQIYKTNINS GAVERVTFVG NYNANPKLSA DEKTLVMIHR QDGFTVFKVA
AQDLETNRLR ILSDTSLDES PTVAPNGTML IYATRQQGRG VLMLASTNGR VRLPLPTAQG
EVREPSWSPY LN
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