Gene Pmen_1269 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPmen_1269 
Symbol 
ID5109085 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas mendocina ymp 
KingdomBacteria 
Replicon accessionNC_009439 
Strand
Start bp1430905 
End bp1431654 
Gene Length750 bp 
Protein Length249 aa 
Translation table11 
GC content63% 
IMG OID640502494 
Producthypothetical protein 
Protein accessionYP_001186766 
Protein GI146306301 
COG category[S] Function unknown 
COG ID[COG0217] Uncharacterized conserved protein 
TIGRFAM ID[TIGR01033] DNA-binding regulatory protein, YebC/PmpR family 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value0.196217 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones39 
Fosmid unclonability p-value0.639481 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCTGGTC ATTCCAAGTG GGCCAACATC AAGCACCGCA AGGGGCGTCA GGACGCCAAG 
CGCGGCAAGA TCTTCACCAA GCTGATCCGT GAACTGACCG TGGCGGCCAA GCATGGTGGC
CCGGTTCCGG CGGACAACCC GCGTCTGCGC CTGGCCGTGG ACAAGGCGCT GACCAACAAC
ATGTCGCGCG AGGTGATCGA CCGCGCCATC GCCCGCGGCG CCGGCAACAA CGAAGCCGAC
AACGTCGTCG AGTTCAGCTA CGAAGGCTAT GCGCCGAGCG GTGTGGCAAT CATCGTCGAG
GTGATGACCG ATAACCGCAA CCGCACTGCC GCCGAAGTGC GTCATGCCTT CACCAAGTGC
GGCGGCAACC TCGGCACCGA TGGTTCGGTC GCCTACATGT TCGAGCGCAA GGGGCAGATC
AGCTTCGCAC CGGGTGTCGA CGAAGACGCC CTGATGGAAG CCGCGCTGGA GGCGGGTGCC
GATGACGTGG AGATGGGCGA GGACGGTTCG GCCTTGGTGT CGACCAGCTT CACCGAGTTC
CACGCCGTCA ACGAGGCGCT GGGCGCTGCC GGCTTCAAGG CCGAGGAGGC GGAAATCGCC
ATGATCCCCT CGATCAGCGC GCCGATCGCT GATCTGGAAA CCGCGCAGAA GGTCTTCAAG
CTGATCGACA TGCTCGAAGA TCTGGATGAC GTGCAGAACG TCTATCACAA CGCCGAAGTC
GCCGACGAGA TCATGGAGCA GCTCGGCTGA
 
Protein sequence
MAGHSKWANI KHRKGRQDAK RGKIFTKLIR ELTVAAKHGG PVPADNPRLR LAVDKALTNN 
MSREVIDRAI ARGAGNNEAD NVVEFSYEGY APSGVAIIVE VMTDNRNRTA AEVRHAFTKC
GGNLGTDGSV AYMFERKGQI SFAPGVDEDA LMEAALEAGA DDVEMGEDGS ALVSTSFTEF
HAVNEALGAA GFKAEEAEIA MIPSISAPIA DLETAQKVFK LIDMLEDLDD VQNVYHNAEV
ADEIMEQLG