Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pmen_1269 |
Symbol | |
ID | 5109085 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas mendocina ymp |
Kingdom | Bacteria |
Replicon accession | NC_009439 |
Strand | + |
Start bp | 1430905 |
End bp | 1431654 |
Gene Length | 750 bp |
Protein Length | 249 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 640502494 |
Product | hypothetical protein |
Protein accession | YP_001186766 |
Protein GI | 146306301 |
COG category | [S] Function unknown |
COG ID | [COG0217] Uncharacterized conserved protein |
TIGRFAM ID | [TIGR01033] DNA-binding regulatory protein, YebC/PmpR family |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 0.196217 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 39 |
Fosmid unclonability p-value | 0.639481 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGGCTGGTC ATTCCAAGTG GGCCAACATC AAGCACCGCA AGGGGCGTCA GGACGCCAAG CGCGGCAAGA TCTTCACCAA GCTGATCCGT GAACTGACCG TGGCGGCCAA GCATGGTGGC CCGGTTCCGG CGGACAACCC GCGTCTGCGC CTGGCCGTGG ACAAGGCGCT GACCAACAAC ATGTCGCGCG AGGTGATCGA CCGCGCCATC GCCCGCGGCG CCGGCAACAA CGAAGCCGAC AACGTCGTCG AGTTCAGCTA CGAAGGCTAT GCGCCGAGCG GTGTGGCAAT CATCGTCGAG GTGATGACCG ATAACCGCAA CCGCACTGCC GCCGAAGTGC GTCATGCCTT CACCAAGTGC GGCGGCAACC TCGGCACCGA TGGTTCGGTC GCCTACATGT TCGAGCGCAA GGGGCAGATC AGCTTCGCAC CGGGTGTCGA CGAAGACGCC CTGATGGAAG CCGCGCTGGA GGCGGGTGCC GATGACGTGG AGATGGGCGA GGACGGTTCG GCCTTGGTGT CGACCAGCTT CACCGAGTTC CACGCCGTCA ACGAGGCGCT GGGCGCTGCC GGCTTCAAGG CCGAGGAGGC GGAAATCGCC ATGATCCCCT CGATCAGCGC GCCGATCGCT GATCTGGAAA CCGCGCAGAA GGTCTTCAAG CTGATCGACA TGCTCGAAGA TCTGGATGAC GTGCAGAACG TCTATCACAA CGCCGAAGTC GCCGACGAGA TCATGGAGCA GCTCGGCTGA
|
Protein sequence | MAGHSKWANI KHRKGRQDAK RGKIFTKLIR ELTVAAKHGG PVPADNPRLR LAVDKALTNN MSREVIDRAI ARGAGNNEAD NVVEFSYEGY APSGVAIIVE VMTDNRNRTA AEVRHAFTKC GGNLGTDGSV AYMFERKGQI SFAPGVDEDA LMEAALEAGA DDVEMGEDGS ALVSTSFTEF HAVNEALGAA GFKAEEAEIA MIPSISAPIA DLETAQKVFK LIDMLEDLDD VQNVYHNAEV ADEIMEQLG
|
| |