| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_1237 |
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| Symbol | |
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| ID | 5108738 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | + |
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| Start bp | 1398153 |
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| End bp | 1399334 |
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| Gene Length | 1182 bp |
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| Protein Length | 393 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 640502462 |
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| Product | patatin |
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| Protein accession | YP_001186734 |
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| Protein GI | 146306269 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG1752] Predicted esterase of the alpha-beta hydrolase superfamily |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 0.880366 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 39 |
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| Fosmid unclonability p-value | 0.614167 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACTGCAG TTGCCCACCC TCATGAGCCT GTCACCGGGC TGATTCTTTC CGGTGGCGGG
GCGCGGGCGG CCTATCAGGT CGGGGTGCTG GCGGCCATCG GCGATCTGCT GCCGGACTCC
TCGCGCAATC CCTTTCCGGT GATAGTCGGC ACCTCGGCCG GCGCGATCAA TGCCGTTGGT
CTGGCCTGCG GCGCGCTGCA CTTCAGCGAG GCCGTGCGCC GCCTGACCAC GGTGTGGCAA
GGCTTCCATA CCCATATGGT GTATCGCAGC GACTGGCCGG GGGTGATACG CCAGGCGACG
CGCTTCATCG GGCACAGCCT GCTCGGCCTG GGCCGCGAAC TGCCGGTAGC GCTGCTCGAC
AGTTCGCCGC TGCGCGAATT GCTGATGCGC GAGCTGGACT TCTCGGGTAT CGCCGCCGCG
GTACGTCATC GGCAGTTGCG CGCGGTGGCG GTGACCGCCT TCGGCTACGA GAGCGGCCAG
GCGGTGACCT TCTACCAGGG CCGCGCCACC ATCGATCCCT GGTTCCGTCA TCGTCGTGTC
GGGGTGCCGA CGCGCCTGCA GCTGGAGCAT CTGCTGGCCA GTGCGTCGAT TCCGCTGATC
TTTCCGCCGG TGAAGATCAA CCGTGAGTAC TTCGGCGACG GGGCGGTACG CCAGGCGGCG
CCGATCAGCC CGGCGCTGCA CCTGGGGGCC AGCCGCGTGC TGGTGATCGG GGTCAGCGGC
AATGCCCAGC TCGAGCCCAA TGCCGCGCTG CCTCGCGTGT CCAGCACGCG GCCGCCGACC
CTGGCGCAGA TCGGCGGGCA CATGCTCAAC AGTACCTTCA TCGACAACCT GGAAACCGAT
ATCGAGCTGC TCGAGCGCCT CAATCAGATG AGTGCCCTGG TGCCGCCGGA GCGCCGTCCG
CGTGGGCTGG GTCTCAATCC GGTGGAGGTG CTGGTGATTG CGCCAAGCCG GCCGCTGGAT
CAGATCGCCG CGCGCCATCA GCACGAGTTG CCCAAGGCGT TGCGCCTGTT CCTGCGTGGC
CCGGGCGCGA CCAAGGCGGG CGGTGCCGGA GTGCTCAGCT ACCTGTTGTT CGAGCCCGGT
TACTGCAGCG AGCTGATCGA GCTGGGGTAT CAGGACGCGA TGGCACGCAA GGCCGACCTA
TGCCGTTTTC TCGGGTTGGC CGAAGTGGCG CAGCCTGCCT GA
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| Protein sequence | MTAVAHPHEP VTGLILSGGG ARAAYQVGVL AAIGDLLPDS SRNPFPVIVG TSAGAINAVG
LACGALHFSE AVRRLTTVWQ GFHTHMVYRS DWPGVIRQAT RFIGHSLLGL GRELPVALLD
SSPLRELLMR ELDFSGIAAA VRHRQLRAVA VTAFGYESGQ AVTFYQGRAT IDPWFRHRRV
GVPTRLQLEH LLASASIPLI FPPVKINREY FGDGAVRQAA PISPALHLGA SRVLVIGVSG
NAQLEPNAAL PRVSSTRPPT LAQIGGHMLN STFIDNLETD IELLERLNQM SALVPPERRP
RGLGLNPVEV LVIAPSRPLD QIAARHQHEL PKALRLFLRG PGATKAGGAG VLSYLLFEPG
YCSELIELGY QDAMARKADL CRFLGLAEVA QPA
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