| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_1232 |
|---|
| Symbol | |
|---|
| ID | 5108733 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas mendocina ymp |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009439 |
|---|
| Strand | - |
|---|
| Start bp | 1394136 |
|---|
| End bp | 1394771 |
|---|
| Gene Length | 636 bp |
|---|
| Protein Length | 211 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 640502457 |
|---|
| Product | ribosomal large subunit pseudouridine synthase A |
|---|
| Protein accession | YP_001186729 |
|---|
| Protein GI | 146306264 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
|---|
| TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 0.3197 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 37 |
|---|
| Fosmid unclonability p-value | 0.341718 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCGCTAA GCCAGATCGA AATTCTCCAC CAGGACGCCG CCCTGCTGGT GATCAACAAG
CCCACTCTGT TGCTGTCGGT GCCGGGTCGT GCCGATGACA ACAAGGATTG CCTGGTTACC
CGCCTGCAGG AAAACGGTTA CCCCGAGGCG CGCATCGTCC ATCGGCTGGA CTGGGAAACC
TCCGGCATCA TCGTCCTGGC CCGCGACGCC GACAGCCATC GCGAGCTGTC GCGCCAGTTC
CACGATCGCG AGACCGAGAA GGCCTATACC GCGCTGTGCT GGGGCCAGCC CGAGGCCGAC
AGTGGCAGCA TCGACCTGCC GCTGCGCTAC GACCCGCCGA CCAAACCGCG CCACGTGGTC
GATCACGAAC TGGGCAAACA CGCCCTGACC CACTGGCGCG TCATCGAGCG CTGCGGCGAC
TGGTGCCGGG TCGAGCTCAC CCCCATCACC GGGCGCTCGC ACCAGCTGCG CGTGCATATG
CTGTCCATCG GCCATCCGCT GCTCGGCGAC CGCCTGTACG CCCACGAACA GGCCCTGGCC
GCCCACGAGC GCCTGTGCCT GCACGCCAGC ATGCTCGCCC TCACCCACCC GCAAAGCGGC
GAACGCCTGC GCTTCGAGTG CCCGGCACCG TTCTGA
|
|---|
| Protein sequence | MPLSQIEILH QDAALLVINK PTLLLSVPGR ADDNKDCLVT RLQENGYPEA RIVHRLDWET
SGIIVLARDA DSHRELSRQF HDRETEKAYT ALCWGQPEAD SGSIDLPLRY DPPTKPRHVV
DHELGKHALT HWRVIERCGD WCRVELTPIT GRSHQLRVHM LSIGHPLLGD RLYAHEQALA
AHERLCLHAS MLALTHPQSG ERLRFECPAP F
|
|---|
| |