| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_1216 |
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| Symbol | |
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| ID | 5108717 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | + |
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| Start bp | 1375344 |
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| End bp | 1376693 |
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| Gene Length | 1350 bp |
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| Protein Length | 449 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 640502441 |
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| Product | D-glucarate dehydratase |
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| Protein accession | YP_001186713 |
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| Protein GI | 146306248 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[R] General function prediction only |
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| COG ID | [COG4948] L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily |
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| TIGRFAM ID | [TIGR03247] glucarate dehydratase |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 0.529304 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 29 |
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| Fosmid unclonability p-value | 0.0486159 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACTTCAC AGATTCCTGC CGCTGTCGGC ACTCCGCTGA TCACCGAGCT GCAAGTCGTA
CCGGTCGCAG GTTACGACAG CATGCTGCTC AACCTGAGCG GAGCCCACGG CCCGTATTTC
ACCCGCAACA TCCTCATTCT CAAGGACAGC GCCGGCCATG TCGGGGTAGG CGAAGTCCCC
GGCGGCGAGG GCATTCGCAA GACCCTCGAA GACGCCCGCG CGATCCTCGT CGGCCAGCCG
GTCGGCAACT ACAACGCATT GCTCAATCAG GTGCGCCGCG CCTTCGCTGA TCGCGACTCT
GGCGGTCGCG GCCTGCAGAC CTTCGACCTG CGTATCACCA TCCATGCCGT CACCGCGCTG
GAGTCGGCGC TGCTCGACCT GCTCGGCCAG CACCTCGGTG TGCCGGTCGC CGCCCTGCTC
GGCGAAGGCC AGCAGCGCGA TGCGGTGGAA ATGCTCGGCT ACCTGTTCTT CATCGCCGAC
AAGGACAAGA CCGATCTCGG CTACCGCGAC GAGCGCGATG CCGACGACGC CTGGCTGCAG
GTGCGCAACC AGACCGCGCT GACCCCCGAG GCCATCGTTC GTCAGGCCGA GGCCGCGCAC
GCGCGCTACG GCTTCAACGA CTTCAAGCTC AAGGGCGGCG TGCTGCACGG CGAGGCCGAA
GTGGAGGCGA TTCGTGCCCT GGCTGCGCGC TTCCCGAATG CCCGCGTGAC GCTCGACCCC
AATGGTGGCT GGTCGCTGGA TCAGGCCATC GCCTTGTGCC GCGACCTGCA CGGTGTGCTG
GCCTATGCCG AAGACCCGTG CGGCGCCGAG AACGGCTACT CCGGTCGTGA AGTGATGGCC
GAGTTCCGCC GTGCCACCGG TCTGCCCACC GCGACCAACA TGATCGCCAC CGACTGGCGG
CAGATGGGCC ACACCATCTC CCTGCAGTCG GTGGACATTC CGCTGGCCGA CCCGCACTTC
TGGACCATGG CCGGCTCCGT GCGCGTGGCG CAGATGTGCA ACGACTGGGG CCTGACCTGG
GGCTCGCACT CCAACAACCA CTTCGACATT TCCCTGGCCA TGTTCACCCA CGTCGCCGCC
GCAGCGCCGG GGCGCATCAC CGCCATCGAC ACCCACTGGA TCTGGCAGGA CGGCCAGTAC
CTGACGCGCA ACCCGCTGCG CATCGAGGGT GGCCTGGTGC AGGTGCCGAA AACGCCGGGC
CTCGGCGTCG AGCTGGATTG GGATGCATTG GCCAAGGCGC ACGAGCTGTA CCAGGCCAAG
GGCCTCGGCG CGCGTGACGA CGCCATTGCC ATGCAGTACC TGATTCCGGG CTGGACCTTC
AATAACAAGA AGCCCTGCCT GGTGCGTTGA
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| Protein sequence | MTSQIPAAVG TPLITELQVV PVAGYDSMLL NLSGAHGPYF TRNILILKDS AGHVGVGEVP
GGEGIRKTLE DARAILVGQP VGNYNALLNQ VRRAFADRDS GGRGLQTFDL RITIHAVTAL
ESALLDLLGQ HLGVPVAALL GEGQQRDAVE MLGYLFFIAD KDKTDLGYRD ERDADDAWLQ
VRNQTALTPE AIVRQAEAAH ARYGFNDFKL KGGVLHGEAE VEAIRALAAR FPNARVTLDP
NGGWSLDQAI ALCRDLHGVL AYAEDPCGAE NGYSGREVMA EFRRATGLPT ATNMIATDWR
QMGHTISLQS VDIPLADPHF WTMAGSVRVA QMCNDWGLTW GSHSNNHFDI SLAMFTHVAA
AAPGRITAID THWIWQDGQY LTRNPLRIEG GLVQVPKTPG LGVELDWDAL AKAHELYQAK
GLGARDDAIA MQYLIPGWTF NNKKPCLVR
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