| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_1214 |
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| Symbol | |
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| ID | 5108715 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | - |
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| Start bp | 1372418 |
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| End bp | 1373812 |
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| Gene Length | 1395 bp |
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| Protein Length | 464 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 640502439 |
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| Product | D-glucarate dehydratase |
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| Protein accession | YP_001186711 |
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| Protein GI | 146306246 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[R] General function prediction only |
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| COG ID | [COG4948] L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily |
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| TIGRFAM ID | [TIGR03247] glucarate dehydratase |
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 30 |
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| Fosmid unclonability p-value | 0.0710823 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCACCAAG CCTCCCCCAG CAGCACACCC CGTATCGTCG ACATGCAGGT CATCCCGGTC
GCCGGCCGTG ACAGCATGCT GCTCAACCTG TGCGGCGCCC ACGCCCCCTA CTTCACCCGC
AACCTGGTGC TGCTCAAGGA CAACGCCGGG CGCACCGGCT GCGGCGAGGT GCCGGGTGGC
GAGGGCATCC GCCAGGCGCT GGAGCGCTGC CGCGAACGGG TGATCGGGCA GTCGGTCGGC
CGCTACAACC GCGTGCTCAA CGATCTACGC CAGGCCATCG CCGGGCCGGC CAAGGGACCG
CAGACCACCC AGCATCAGGT CACCTCGGAG GCCGAGGCAC GGGTGCTGGC ACAGCCGCAC
GAGATCAACC TGCGCCTGGA CAACGTGATC ACCGCGGTCG AAGCGGCCCT GCTGGATCTG
CTCGGCCAGC ACCTCGAGGT GCCGGTGGCC GAGCTGCTCG GCAGCGGCCA GCAGCGCCAG
CGCGTGCCGA TGCTTGCCTA CCTCTTCTAT ATCGGTGAAC GCCAGCGCGC CGACCTGCCC
TACCTGGCCG GCAAAGGCTC CGCGGATGAC TGGTATCACC TGCGCCACCA GGCCGCGCTG
ACGCCGGACG CCATCGCCCG CCTGGCCGAG GCCGCCCGCG CGCGCTATGG CTTCGCCGAT
TTCAAGCTCA AGGGCGGGGT GATGCGTGGC GCCGAGGAGA TGGAGGCGAT CCGCGCGATC
AAGGCGCGCT TCCCCGATGC CCGCGTCACC CTCGACCCCA ACGGCGCCTG GTCGCTGGAC
GAAGCCATCG CCCTGTGCAA GGGCCAGGGT CATGTACTGG CCTATGCCGA AGACCCCTGC
GGACCGGAAA ACGGCTACTC GGGCCGCGAG GTGATGGCCG AATTCAAGCG CGCCACCGGC
ATTCCCACCG CCACCAACAT GGTCGCCACC GACTGGCGGC AGATGGGCCA CTCGCTGCGC
CTGGAGGCCG TCGACATTCC GCTGGCCGAC CCGCACTTCT GGACCATGCA GGGCGCCGTG
CGCCTCGGCC AGGTGTGCGA GGAATTCGGC CTGACCTGGG GCTCGCATTC CAACAACCAC
TTCGACATCT CACTGGCCAT GTTCACCCAT GCCGCCGCTG CCGTGCCCGG GCGCATCACC
GCCATCGACA CCCACTGGAT CTGGCAGGAA GGCGAAGAGC GCCTGACCCG TGAACCGCTG
CGCATCGTCG GCGGTCAGGT ACAGGTGCCG GACAAGCCCG GCCTCGGCAT CGAGCCGGAC
ATGCAGCGAA TAATGGCCGC CCACGAGCTG TACAAGAAGG TGGCCAGCGG CGCGCGCGAC
GACGCCATGG CCATGCAGTA CCTGGTTCCG GGTTGGCAAT ACCACCCGAA GCGCCCCAGC
CTCGGCCGCG ACTGA
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| Protein sequence | MHQASPSSTP RIVDMQVIPV AGRDSMLLNL CGAHAPYFTR NLVLLKDNAG RTGCGEVPGG
EGIRQALERC RERVIGQSVG RYNRVLNDLR QAIAGPAKGP QTTQHQVTSE AEARVLAQPH
EINLRLDNVI TAVEAALLDL LGQHLEVPVA ELLGSGQQRQ RVPMLAYLFY IGERQRADLP
YLAGKGSADD WYHLRHQAAL TPDAIARLAE AARARYGFAD FKLKGGVMRG AEEMEAIRAI
KARFPDARVT LDPNGAWSLD EAIALCKGQG HVLAYAEDPC GPENGYSGRE VMAEFKRATG
IPTATNMVAT DWRQMGHSLR LEAVDIPLAD PHFWTMQGAV RLGQVCEEFG LTWGSHSNNH
FDISLAMFTH AAAAVPGRIT AIDTHWIWQE GEERLTREPL RIVGGQVQVP DKPGLGIEPD
MQRIMAAHEL YKKVASGARD DAMAMQYLVP GWQYHPKRPS LGRD
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