| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_1171 |
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| Symbol | |
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| ID | 5106558 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | + |
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| Start bp | 1318463 |
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| End bp | 1319803 |
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| Gene Length | 1341 bp |
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| Protein Length | 446 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 640502393 |
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| Product | outer membrane porin |
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| Protein accession | YP_001186668 |
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| Protein GI | 146306203 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.00378662 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 37 |
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| Fosmid unclonability p-value | 0.540471 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAAAAAAA GTCCTCTAAC CATGGCGATC ATCTCCGCGT TGGCATTCGG TGCAAGCGCG
ATGGCTCAGG CATCCGAGTC TCAGGTTGCC GAAGGCTTCA TCGAAGGAAG TAGCCTGAAT
ATTCTTAACC GAAACATGTA TTTCAACCGG GACTTTCGCA AAGGGGGGGC CAGGGTACTA
CCCAGCGGTG AGCGCAGCAG CTACACCGAG GCTTGGGGGC ACGGCATCAT GGCTAACTTC
GAGTCCGGTT TCACTCAGGG AACCGTTGGT TTCGGCATTG ACGCCTATGC CGGACTGGGC
CTGAAGCTTG ATACCGGTGA TGGACGTTAT GGTCCCGGTG GTAGTGTCAA CATGTTCCCG
GTCGACAGCG ATGATCGTGC CGAGGACTCG TATTCGAAAG TGGGGGCCGC GGTAAAGGCG
CGCTTCGCTG ATACGGTCGT CAAGGCCGGT GACGTATTCC CAACCACGCC CGTCGTGCAC
TACGGGGACT CTCGTCTGCT GCCGCAGAGC TTCAAAGGTG TGACGGTCGT CAACGAAAGC
ATAGAGGGCC TGACCCTGCA AGGCGGTCGT CTACATGCCA TGAGCCAACC GCAGGAGAGC
ACTTCACGCG GTGATTTCGC GACCTTCTAT GCTGGGCAGG TGGACTCTCC CTGGGTCGGC
TACTTTGGTG GTGACTACGA GCTCAACGAC AACCTGGGCT TCAGCCTTTA CAGCAGCCGT
TTGAAGGATG CCTGGGATCA GTACTACGCT GGCATGTGGT GGACTTACCC ACTTTCCGAG
GATCTGTCGT TGTTTGGTGG TCTGAATTAC TACAACGCCA CCGACGAAGG TAAGAAGCAG
CTGGGTGATT TCAGTAACAA CATCTATAGC GGTAGCATCG GTGTCAAGTA CGGCGCTCAC
CGTGTAGCGC TCTCTCACCA GCGTAACAAC GGCGATGACG ACTTTGACTA CCTGCGTCAG
TCCGACTCGA TCTTCCTCGA CAACTCCCTT CAGTACAGCG ACTTCAACTC GCCCAAGGAA
CGCTCCTGGA TGGTGCGCTA CGATCTGGAC ATGGCTGACT TTGGTGTGCC AGGGCTGAGC
TTCATGGCGC GTTACGCGCT GGGACGTGAT GCGGATTACT CCAATGCCAA CAGCATTTAC
ATGCGCACGG ATGGTGCCGG TAACCCGCTG ACCGATCAGA AGCGCTGGGA GCGCAACCTT
GAGGTCAAAT ACGTGTTCCT CGAGGGTTCT CTGAAGGATC TGTCCGTGCG TGTACGTCAG
ATGACCACTC GCGCTACTGC TTACGAAAGC GACCTCGATG AAGTGCGTGT AATCGTCGAG
TATCCGCTTC AGGTGCTGTA A
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| Protein sequence | MKKSPLTMAI ISALAFGASA MAQASESQVA EGFIEGSSLN ILNRNMYFNR DFRKGGARVL
PSGERSSYTE AWGHGIMANF ESGFTQGTVG FGIDAYAGLG LKLDTGDGRY GPGGSVNMFP
VDSDDRAEDS YSKVGAAVKA RFADTVVKAG DVFPTTPVVH YGDSRLLPQS FKGVTVVNES
IEGLTLQGGR LHAMSQPQES TSRGDFATFY AGQVDSPWVG YFGGDYELND NLGFSLYSSR
LKDAWDQYYA GMWWTYPLSE DLSLFGGLNY YNATDEGKKQ LGDFSNNIYS GSIGVKYGAH
RVALSHQRNN GDDDFDYLRQ SDSIFLDNSL QYSDFNSPKE RSWMVRYDLD MADFGVPGLS
FMARYALGRD ADYSNANSIY MRTDGAGNPL TDQKRWERNL EVKYVFLEGS LKDLSVRVRQ
MTTRATAYES DLDEVRVIVE YPLQVL
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