| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_1110 |
|---|
| Symbol | putA |
|---|
| ID | 5108083 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas mendocina ymp |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009439 |
|---|
| Strand | - |
|---|
| Start bp | 1247558 |
|---|
| End bp | 1251493 |
|---|
| Gene Length | 3936 bp |
|---|
| Protein Length | 1311 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 640502334 |
|---|
| Product | trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase |
|---|
| Protein accession | YP_001186609 |
|---|
| Protein GI | 146306144 |
|---|
| COG category | [C] Energy production and conversion
[E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0506] Proline dehydrogenase
[COG4230] Delta 1-pyrroline-5-carboxylate dehydrogenase |
|---|
| TIGRFAM ID | [TIGR01238] delta-1-pyrroline-5-carboxylate dehydrogenase (PutA C-terminal domain) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 34 |
|---|
| Fosmid unclonability p-value | 0.471549 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCTACCA CCACCCTCGG CGTAAAACTC GACGATGCCA CCCGCGAGCG CCTGAAGAAG
GCCGCTGCGC AGATCGACCG TACGCCGCAC TGGATGATCA AGCAGGCGAT CTTCAATTAT
CTGGAGCAGG TCGAGAGTGG CCTGACGCCC GCCGAGCATG CCGGCCTGGC CGCTGCCGCC
GGCGAGGAAG CCCTGGAGTC GCTGACCGAG CAGGGTCTGC AGGTGTTCCT CGACTTCGCC
GAGAGCATCC TGCCGCAGTC GGTACTGCGC GCCGCCATCA CCAGCGCCTA CCGTCGCCCG
GAAACCGAAG TGGTGCCGAT GCTGCTGGAG CAGGCGCGCC TGAACCCGCA GCAGGCCGAG
GCCTCGCAGA AGCTGGCGCT GGGCATCGCC GAGAAGCTGC GCAACCAGAA GAACGCCAGC
GGCCGTCAGG GCCTGGTGCA GGGCCTGTTG CAGGAGTTCT CGCTGTCGTC GCAGGAAGGC
GTGGCGCTGA TGTGCCTGGC CGAAGCCCTG CTGCGCATCC CCGACAAGGC CACCCGCGAC
GCGCTGATCC GCGACAAGAT CGCCAACGGC AACTGGAGCC AGCACCTCGG CCAGAGCCCG
TCGATGTTCG TCAACGCGGC CAGCTGGGGC CTGCTGATCA CCGGCAAGCT GGTGTCCACC
CACAACGAGG CCGGCATGAC CTCGGCGCTC AATCGCATCA TCGGCAAGAG CGGCGAGCCG
GTGATCCGCA AGGGCGTGGA CATGGCCATG CGCCTGATGG GCGAGCAGTT CGTCACCGGC
GAGACCATCG CCGAAGCCCT GGCCAACGCC GCCAATCTGG AGGCCAAGGG CTTCCGCTAC
TCCTACGACA TGCTCGGTGA AGCCGCGCTG ACCGAGGAAG ATGCCAAGCG CTACCTGGCC
TCCTACGAGC AGGCCATCCA CGCCATCGGC AAGGCCTCGC ACGGTCGTGG CATCTATGAA
GGCCCGGGCA TCTCGATCAA GCTCTCCGCC CTGCACCCGC GCTACAGCCG CGCCCAATAC
GAGCGCGTGA TGGACGAGCT GTACCCGACC CTGCTGGGCC TGACCCAGCT GGCCAAGCAG
TACGACATCG GCATCAACGT CGACGCCGAG GAAGCCGACC GCCTGGAGCT GTCGCTGGAC
CTGCTCGAGC GCCTGTGCTT CGAGCCCTCC CTGGCCGGCT GGAACGGCAT CGGCTTCGTC
ATCCAGGCCT ACCAGAAGCG CTGCCCGTAC GTGATCGACT ACGTCATCGA CCTGGCCAAG
CGCAGCCGTC ATCGCCTGAT GATCCGCCTG GTCAAGGGCG CCTACTGGGA CAGCGAGATC
AAGCTGGCTC AGGTCAACGG CCTGGAAGGC TACCCGGTGT ACACCCGCAA GCCGTACACC
GACGTGTCCT ACATCGCCTG TGCGCGCAAG CTGCTGGCTG CGCCGGAAGC CATCTACCCG
CAGTTCGCCA CCCACAACGC CCACTCGCTG TCGGCCATCT ACCACCTGGC CGGGCAGAAC
TACTACCCGG GCCAGTACGA GTTCCAGTGC CTGCACGGCA TGGGCGAACC GCTGTACGAG
CAGGTGGTGG GCAAGGTCGC CGACGGCAAG CTGAACCGTC CGTGCCGCAT CTACGCGCCG
GTGGGCAGCC ACGAAACCCT GCTGGCCTAC CTGGTACGCC GCCTGCTGGA AAACGGCGCC
AACACCAGCT TCGTCAACCG CATCGCCGAC CACAGCATCT CGCTCAAGGA TCTGGTTCTC
GACCCGGTGC AGCAGGTCGA GCAGATGGCC GCACAGGAAG GCGCCGTCGG TCTGCCGCAC
CCGCGCATCG CGCTGCCGCG CGACCTGTAC GGCAAGGAGC GGGTCAACTC CTCGGGCCTG
GATCTGGCCA ACGAACATCG CCTCGGCTCG CTGTCCTCGG CACTGCTGTC CACCGTCAAC
CACAGCTACC TGGCCGAGCC GATGCTCGGT TGCGATGGCG CCAACCCGGG CGAGCCGGAG
CCGGTACGCA ACCCGGCCGA CCATCGCGAC CTGGTCGGCC ATGTGCGCGA AGCCAGCGTT
GCCGACGTCG ACAGCGCCCT ACTCTGCGCC CTGGCCAGTG GGCAGATCTG GCAATCCACC
CTGCCGGCCG AACGCGCCGC CGTACTGGAG CGCGCCGCCG ACCTGATGGA GGCCGAGCTG
CAGCAACTGA TGGGCCTCTT GGTGCGCGAG TCCGGCAAGA CCTTCGCCAA CGCCATCGCC
GAAGTGCGCG AGGCGGTGGA CTTCCTGCGT TATTACGCGA TCCAGGCGCG CAGCTTCGGC
AACGACAGCC ACCGCCCGCT GGGCCCGGTG GTGTGCATCA GCCCGTGGAA CTTCCCCCTG
GCGATCTTCA CCGGCCAGGT CTGCGCCGCG CTGGCCGCCG GCAACACCGT GCTGGCCAAG
CCGGCCGAGC AGACCCCGCT GATCGCCGCC CAGGCCGTGC GCATCCTGCG CGAGGCCGGC
GTACCGGCTG GCGCCGTGCA ACTGCTGCCG GGCCGTGGCG AAACCGTCGG TGCGCGCCTG
GTGGGTGACG AGCGTGTGCG CGGGGTGATG TTCACCGGTT CCACCGAGGT GGCCGGCATC
CTCCAACGCA ATATCGCCGG GCGCCTGGAT GCCCAGGGCC GCACCATTCC GCTGATCGCC
GAGACCGGCG GTCTCAACGC CATGATCGTC GACTCCTCGG CGCTGACCGA GCAGGTGGTG
ATGGACGTGG TCGCCTCCGC CTTCGACAGC GCCGGCCAGC GCTGCTCGGC CCTGCGCGTG
CTGTGCGTGC AGGACGACGT GGCCGATCGC GTGCTGACCA TGCTCAAGGG CGCCATGGCC
GAATACAGCC TCGGCAACCC GGAGCGCCTG AACACCGACA TCGGCCCGGT GATCGACGCC
GAGGCCAAGG CCGGCATCGA AACCCACATC GCCAAGCTGC GCGAAAAAGG CCGCAAGGTC
ACCCAACTGG CGCGCGTCAA CGGCGAGGAG ATCAAGCGTG GCACCTTCGT CGTGCCGACC
TTGATCGAGC TGGACAGCTT CGACGAGATG AAGCGCGAGA TCTTCGGCCC GGTGCTGCAC
GTGGTGCGCT ACGCCCGTGC CGATCTGGGC AAGCTGCTGC AGCAGATCAA CGACAGCGGC
TACGGCCTGA CCCTCGGCGT GCACACCCGC ATCGACGAGA CCATCGCCCA GGTGGTGAGC
ACGGCCAAGG TCGGCAACCT GTACGTGAAC CGCAACATGG TCGGCGCCGT GGTCGGCGTG
CAGCCGTTCG GTGGTGAAGG TCTGTCCGGC ACCGGCCCGA AAGCCGGCGG CCCGCTGTAC
CTGTATCGCC TGCTGTCGAC CCGCCCGCAG GAGGCCGTCG CCCAGTACCT GCAACAGGCC
GAGGTGCAGA CCCTGCCGGT TCCGAGCGAG CTGGACAAGG TGCGCACCGC CTTCGCCGAG
TGGGCGAGCA AGCAGGAGCC AGGCATCGCC GCGCTGTTCG AGCAGTACCG CACGCTGTCG
CAGAGCTACA GCAGCCACAC GCTGACCGGC CCGACCGGCG AGCGCAACAG CTACAGCCTG
CTGCCGCGCG AGCGCGTGCT CAACCTGGCC GACGAGCGCA GCGACCTGCT GGCCCAGCTG
GCCGCCACCC TGGCGGTGGG TAGCCAGGCG ATCTGGCTGG AGAGCCAGCG CACGCTGCAC
GCCGAACTGC CGAAGGAAGT GCAGAAGCAC ATCCAGCTGG TGGCCGACTG GAACAGCATC
GACGTGGAGC TGGACGCCAT CCTGCACCAC GGCGATTCCG ACCAGCTGCG CGCGGTGAGC
GAGCAGGCGG CGCAGCGCAA GGGCGCCATC GTCGGCGTGC ACGGGCTGAA CAAGGGCGAG
ACCGACATCC CGCTGGAGCG CCTGCTGATC GAACACGCCC TGAGCGTCAA CACCGCGGCC
GCCGGCGGTA ACGCCAGCCT GATGACCATC GGCTGA
|
|---|
| Protein sequence | MATTTLGVKL DDATRERLKK AAAQIDRTPH WMIKQAIFNY LEQVESGLTP AEHAGLAAAA
GEEALESLTE QGLQVFLDFA ESILPQSVLR AAITSAYRRP ETEVVPMLLE QARLNPQQAE
ASQKLALGIA EKLRNQKNAS GRQGLVQGLL QEFSLSSQEG VALMCLAEAL LRIPDKATRD
ALIRDKIANG NWSQHLGQSP SMFVNAASWG LLITGKLVST HNEAGMTSAL NRIIGKSGEP
VIRKGVDMAM RLMGEQFVTG ETIAEALANA ANLEAKGFRY SYDMLGEAAL TEEDAKRYLA
SYEQAIHAIG KASHGRGIYE GPGISIKLSA LHPRYSRAQY ERVMDELYPT LLGLTQLAKQ
YDIGINVDAE EADRLELSLD LLERLCFEPS LAGWNGIGFV IQAYQKRCPY VIDYVIDLAK
RSRHRLMIRL VKGAYWDSEI KLAQVNGLEG YPVYTRKPYT DVSYIACARK LLAAPEAIYP
QFATHNAHSL SAIYHLAGQN YYPGQYEFQC LHGMGEPLYE QVVGKVADGK LNRPCRIYAP
VGSHETLLAY LVRRLLENGA NTSFVNRIAD HSISLKDLVL DPVQQVEQMA AQEGAVGLPH
PRIALPRDLY GKERVNSSGL DLANEHRLGS LSSALLSTVN HSYLAEPMLG CDGANPGEPE
PVRNPADHRD LVGHVREASV ADVDSALLCA LASGQIWQST LPAERAAVLE RAADLMEAEL
QQLMGLLVRE SGKTFANAIA EVREAVDFLR YYAIQARSFG NDSHRPLGPV VCISPWNFPL
AIFTGQVCAA LAAGNTVLAK PAEQTPLIAA QAVRILREAG VPAGAVQLLP GRGETVGARL
VGDERVRGVM FTGSTEVAGI LQRNIAGRLD AQGRTIPLIA ETGGLNAMIV DSSALTEQVV
MDVVASAFDS AGQRCSALRV LCVQDDVADR VLTMLKGAMA EYSLGNPERL NTDIGPVIDA
EAKAGIETHI AKLREKGRKV TQLARVNGEE IKRGTFVVPT LIELDSFDEM KREIFGPVLH
VVRYARADLG KLLQQINDSG YGLTLGVHTR IDETIAQVVS TAKVGNLYVN RNMVGAVVGV
QPFGGEGLSG TGPKAGGPLY LYRLLSTRPQ EAVAQYLQQA EVQTLPVPSE LDKVRTAFAE
WASKQEPGIA ALFEQYRTLS QSYSSHTLTG PTGERNSYSL LPRERVLNLA DERSDLLAQL
AATLAVGSQA IWLESQRTLH AELPKEVQKH IQLVADWNSI DVELDAILHH GDSDQLRAVS
EQAAQRKGAI VGVHGLNKGE TDIPLERLLI EHALSVNTAA AGGNASLMTI G
|
|---|
| |