| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_1010 |
|---|
| Symbol | |
|---|
| ID | 5108632 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas mendocina ymp |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009439 |
|---|
| Strand | + |
|---|
| Start bp | 1138916 |
|---|
| End bp | 1139731 |
|---|
| Gene Length | 816 bp |
|---|
| Protein Length | 271 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 640502227 |
|---|
| Product | CDP-diacylglycerol--serine O-phosphatidyltransferase |
|---|
| Protein accession | YP_001186510 |
|---|
| Protein GI | 146306045 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG1183] Phosphatidylserine synthase |
|---|
| TIGRFAM ID | [TIGR00473] CDP-diacylglycerol--serine O-phosphatidyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.00634398 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 0.0000373053 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAGTGAAG GTCCCGAGGA TCAAAAGCCG GCTGGCGACA ACCTGGAAAG CCTGCTGCCG
ATCGACGAGC ACATAGAGGA GGGGCGGGAC GCGGAAGGGC GCAAGGTGCG TCACCGCGGT
ATCTACCTGC TTCCCAACCT GTTCACCACG GCCAACCTGT TCGCCGGTTT CTATTCCATC
ATCAATGCGA TGAACGGCAA CTTCTACGTC GCCGCCGCCG CGGTGTTCGT CGCCATGGTG
CTCGACAGTC TGGACGGCCG CGTCGCGCGC CTGACCAACA CGCAGAGCGC CTTTGGCGCC
GAGTATGATT CGCTGTCCGA CATGGTTGCC TTCGGTGTGG CTCCGGCCTT GCTGGCTTTC
GAATGGGCGC TGGGCAGCAT GGGCAAGGTC GGCTGGATGG TTGCCTTCAT CTACGTGGCG
GGGGCGGCGT TGCGTCTGGC CCGCTTCAAT ACGCAGATCG GCAGCGTCGA CAAGCGCTAT
TTCATTGGTC TGGCCAGCCC GGCTGCGGCC GGTGTGGTTG CCGGTACGGT CTGGGCATTC
AGTGATTTCG GCATCAAGGG TTCGAACATG GCCTTTGCCG TGGCCCTGCT GGTTGCTGCC
GCCGGCTGCT TGATGGTCAG CAATATCAAG TACTACAGCT TCAAGGATCT GGACCTGAAG
GGGCGCGTAC CTTTCGTTGC GATTCTGGTG GTTGTGCTGG TCTTTGCCGT GGTGTTCAGC
GATCCGCCGC GCATTCTGTT GCTGATCTTC CTGGCCTACG CCTTTTCTGG CCCCATTCAG
TACCTGCTGC AGCTGCGTCG TCGTAAATCA GTCTGA
|
|---|
| Protein sequence | MSEGPEDQKP AGDNLESLLP IDEHIEEGRD AEGRKVRHRG IYLLPNLFTT ANLFAGFYSI
INAMNGNFYV AAAAVFVAMV LDSLDGRVAR LTNTQSAFGA EYDSLSDMVA FGVAPALLAF
EWALGSMGKV GWMVAFIYVA GAALRLARFN TQIGSVDKRY FIGLASPAAA GVVAGTVWAF
SDFGIKGSNM AFAVALLVAA AGCLMVSNIK YYSFKDLDLK GRVPFVAILV VVLVFAVVFS
DPPRILLLIF LAYAFSGPIQ YLLQLRRRKS V
|
|---|
| |