| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_0969 |
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| Symbol | |
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| ID | 5108591 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | + |
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| Start bp | 1094369 |
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| End bp | 1095343 |
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| Gene Length | 975 bp |
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| Protein Length | 324 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 640502186 |
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| Product | ribosomal large subunit pseudouridine synthase D |
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| Protein accession | YP_001186469 |
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| Protein GI | 146306004 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
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| TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
| Num covering plasmid clones | 28 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 36 |
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| Fosmid unclonability p-value | 0.466312 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACTTCTA TAGACAAACA ATTGATCCAA CTCCAGGCCA TCGTCCCCTT CGAACAGGGC
GGCCAGCGCC TCGACCAGGT GGCTGCGCAG CTGTTTGGCG AGTTTTCGCG CTCGCGCCTT
TCCACCTGGA TCAAGGACGG TCGCCTGACC GTCGACGGTG CCGTGGCGCG CCCGCGTGAC
ACCGTGCATG CCGGCTCGAC CCTGGTGCTC GATGCCGAGC AGGAAGCGCA GGGCGAGTGG
GTGGCGCAGG ACATCGAGCT GAACATCGTC TACGAGGACG AGCACCTGCT GGTGATCGAC
AAGCCGGCAG GCCTGGTCGT CCACCCGGCT GCCGGGCATG CCGATGGCAC CCTGCTCAAC
GCCCTGCTGC ATCACGTGCC GGACATCATC AACGTGCCGC GCGCCGGCAT CGTGCATCGT
CTGGACAAGG ACACCACCGG CCTGATGGTG GTGGCCAAGA CCCTGCAGGC GCAGACCAAC
CTGGTCGAGC AGCTGCAGAA GCGTAGCGTC AGCCGCATCT ACGAATGCAT CTGCATCGGC
GTGATCACCG CCGGCGGCAC CATCGATGCG CCGATCGGCC GCAGCTCCAG CCAGCGTCAG
CGCATGGCCG TGACCGATGG CGGCAAGCCG GCGATCAGTC ACTACCGCGT GCTGGAACGC
TACCGCTCGC ACACCCATGT ACGGGTCAAG CTGGAAACCG GGCGCACCCA TCAGATTCGC
GTGCACATGA GCCACGTCGG TTATCCGCTG GTGGGCGACC CGGTGTATGC CGGGCGCTTC
CGCATTCCGC CGGCGGCCAG CCAGAGTCTG GTGCAGAGCC TCAAGGAGTT TCCACGCCAG
GCCCTGCATG CGCGCTTCCT CGAGCTGGAC CATCCGGCCA CCGGCAAGCG CATGAAGTGG
GAATCGCCGC TGCCTGACGA TCTGGTCTGG CTGCTGACCC TGCTGCGTCA GGATCGCGAG
GCCTTCGTCG GGTGA
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| Protein sequence | MTSIDKQLIQ LQAIVPFEQG GQRLDQVAAQ LFGEFSRSRL STWIKDGRLT VDGAVARPRD
TVHAGSTLVL DAEQEAQGEW VAQDIELNIV YEDEHLLVID KPAGLVVHPA AGHADGTLLN
ALLHHVPDII NVPRAGIVHR LDKDTTGLMV VAKTLQAQTN LVEQLQKRSV SRIYECICIG
VITAGGTIDA PIGRSSSQRQ RMAVTDGGKP AISHYRVLER YRSHTHVRVK LETGRTHQIR
VHMSHVGYPL VGDPVYAGRF RIPPAASQSL VQSLKEFPRQ ALHARFLELD HPATGKRMKW
ESPLPDDLVW LLTLLRQDRE AFVG
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