Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pmen_0924 |
Symbol | ddl |
ID | 5108782 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas mendocina ymp |
Kingdom | Bacteria |
Replicon accession | NC_009439 |
Strand | + |
Start bp | 1044262 |
End bp | 1045203 |
Gene Length | 942 bp |
Protein Length | 313 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 640502141 |
Product | D-alanine--D-alanine ligase |
Protein accession | YP_001186424 |
Protein GI | 146305959 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG1181] D-alanine-D-alanine ligase and related ATP-grasp enzymes |
TIGRFAM ID | [TIGR01205] D-alanine--D-alanine ligase |
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Plasmid Coverage information |
Num covering plasmid clones | 27 |
Plasmid unclonability p-value | 0.783773 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 42 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGTTTGC ACAGTAGCCT CGATCCCAAG GCTTTCGGTC GCGTCGCCGT GCTGTTCGGC GGCAAGAGCG CCGAGCGCGA GGTGTCGCTG AAATCCGGCA ATGCCGTGCT CAGCGCCCTG CAGGCGGCCG GGGTGGACGC CTTCGGCATC GACGTGGGCG ATGATTTCCT GCAGCGCCTT GCCAGCGAGA AGATCGACCG CGCCTTCATC GTGCTGCACG GCCGCGGTGG CGAGGATGGC TCCATGCAGG GCCTGCTCGA GTGCGCCGGC ATTCCCTACA CCGGCAGCGG CATCCTCGCC TCGGCGCTGG CCATGGACAA GCTGCGTACC AAGCAGGTCT GGCACAGCCT CGGCCTGCCG ACGCCGCGTC ACGCCGTGCT CACGTCGCAG GCCGACTGCG AAGCGGCGGC TGCCGAACTG GGTTTCCCGC TGATCGTCAA GCCGGCCCAT GAAGGCTCCA GCATCGGCAT GGCCAAGGTC GAGAGCGTCG AGGCGCTGAT CGCGGCCTGG CAGGACGCCG CGCGCTACGA CAGTCAGGTA CTGGTCGAGC AGTGGATCGC CGGCCCCGAG TACACCGTGG CCGTGCTGCG TGGCGAAGTG CTGCCGCCCA TTGGCCTGGG CACGCCGCAC AGCTTCTACG ACTACGACGC CAAGTACCTG GCCGATGACA CCCAGTACCG CATTCCCTGC GGCCTCTCGG CCGAGAAGGA GGCGGAACTG AAAGAGCTGA CCGCGCGCGC CTGCGAGGCC GTGGGCACCC AGGGCTGGGC GCGTGCAGAC GTGATGCAGG ATGCCAGTGG CCAGTTCTGG CTGCTGGAAG TGAACACCGT ACCGGGCATG ACCGATCACA GCCTGGTACC GATGGCCGCG CGCGCCGCCG GTCTGGATTT CCAGCAGCTG GTACTGGCGA TCCTGGCCGA CAGCGTCGAG GCGAGGGGTT AA
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Protein sequence | MSLHSSLDPK AFGRVAVLFG GKSAEREVSL KSGNAVLSAL QAAGVDAFGI DVGDDFLQRL ASEKIDRAFI VLHGRGGEDG SMQGLLECAG IPYTGSGILA SALAMDKLRT KQVWHSLGLP TPRHAVLTSQ ADCEAAAAEL GFPLIVKPAH EGSSIGMAKV ESVEALIAAW QDAARYDSQV LVEQWIAGPE YTVAVLRGEV LPPIGLGTPH SFYDYDAKYL ADDTQYRIPC GLSAEKEAEL KELTARACEA VGTQGWARAD VMQDASGQFW LLEVNTVPGM TDHSLVPMAA RAAGLDFQQL VLAILADSVE ARG
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