| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_0887 |
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| Symbol | |
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| ID | 5108745 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | - |
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| Start bp | 1005094 |
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| End bp | 1007172 |
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| Gene Length | 2079 bp |
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| Protein Length | 692 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 640502103 |
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| Product | TonB-dependent siderophore receptor |
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| Protein accession | YP_001186387 |
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| Protein GI | 146305922 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG4773] Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid |
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| TIGRFAM ID | [TIGR01783] TonB-dependent siderophore receptor |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 43 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGCGCGCCG TTCCCGCCCT GCTCGCCAGC CTGCTAGTGC CTTGCGCTCT GGCTGGAGAA
TCCCCCGCAC AGCTGGAAGA CAGCATCATC AGCGCTAGCC CGGAGCTGGC CGACGGCCCG
GTACAGGGCT ATCGCGCCAC GCGTTCGGCC AGCGCCACCC GCACCGACAC GCCAATCAAC
GAGATTCCCC AGGCCATCAG CGTGGTGCCG GCTCAGGTGC TGGAAGACCT CGGCAGCAGC
CGTATCGACC GCGCTCTGGA CTTCGCCGGC GGCGTGTCGC GACAGAACAA CTTCGGCGGC
CTGACCTTCC TCAACTACAG CGTGCGCGGC TTCACCACCG GCGAGCTGTA CCGCAACGGC
TTCGCCATCA ACCGCGGCAG CTACAGCTCA CCGGACGCCT CGGCCATCGA GCGCCTGGAA
GTGCTCAAGG GCCCGGCAGC CGCCCTGTAC GGCCGTGGCG ATCCGGGCGG GCTGGTCAAC
ATCGTCACCA AGCGCCCGCA ACAGGAAGCC TTCACCCAGT TCAAGGCCAG CGCCGGACGC
TGGGATCGCT ACCGCAGCAG CCTCGACGTC AATACCCCGC TGAACGACGA GGGCACGCTG
CTCTCGCGCG TCAACCTGGC GGTGGAGGAC AACGGCAGCT TCCGCGATCA CGTCGGCAAT
CAGCGGCAGA TCGTCAACCC GAGCCTGAGT TGGCAGCTGT CGCCGGACAC CCTGCTGATG
ATCGACAGCG AGTTCTCGCG CACCGATTCG GTGTTCGACC GCGGCATTCC CGCCGTCGAC
GGCAAGATGG GAGCGGTCAA GCGCTCGACC TTCCTCGGCG AACCCAACGA CGGCGAGATC
CGCAACGACA ACCAGCTGCT GCAGGTGAGC CTGGAACACT TTCTCAGCGA TGCCTGGAAG
CTGCGCCTGG CCAGCCATTA CAGCCAGGGC ACCCTGGACG GCAACAGTTC CGAGCCGTCG
AGGCTGATCG GCGACCAGGT CACGCGCTTC TACCGCGAGC GCAGCTTCGA GTGGAACGAC
AGCATCACCC AGGCCGAGCT GCACGGCCAG TTCGAGCTGG CCGGCTGGCA GCACCAGACG
CTGCTGGGCC TGGAGTACGA GAACTACCGC AACAGCCAGA AGTACCCGCA GAGCGTCACC
GGTCTGGGCT ACGGCCAGAA CATCTACAAC CCGATCTATG GCCAGCCCAA GCCGCCCCTG
GTCAATCCCA ACGACTTCCA CGAACACACG GAAAGCTACG CCCTCAACCT GCAGGACCAG
ATCACCTTCA GCGAACGCTG GAGCGGCCTG CTCGGCGTGC GTCTGGAGCG TTTCGAGCAG
ACCGCGCGCA ACCGCAGCAC GCGGGTCAGC AACGAGCAGA CCAAGGAGGT CGCTACCCCG
CGTGCCGGCG TGCTCTACCA GCTGACGCCG GAAGTCGGCG TGTTCGCCAA CGCCTCGATG
TCGTTCAAGC CCAACACCAT CGGCGCCCAG GGGCAGGTGT TCAAACCGGA GAAGGGCCTC
GGCTACGAGA CCGGCCTGAA GCTCGACCTG TTCGACAGCC GCCTCGGCGC CACCGTGGCG
CTGTTCCATA TCGAGAAGGA AAACGTGCTG ACCGCCGACC CGAACAATCC CGGCGACAGC
ATCGCCGCCG GCAAGGCCCG CAGCCAGGGC CTGGATCTGC AGGTCAGCGG CCAGCTCACC
GATGCCCTAC GAGTGATCGG CGCCTATGCC TACATCGACG CCGAGGTGAC CAAGGACAAC
AGCATCCCCG AGGGTAGCGA TCTGCTCGGC ATCGCCCGCA ACAGCGCCAG CCTGATGGGC
GTCTACCAGT TCCAGGGCGG CTCGCTGCAG GGCTCGGAAT TCGGCGCCGC AGTCAACTAC
GTCGGCGACC GTTCCGGGCA GACCGGCAGC AACTTCGAGC TGCCGGCCTA CACCACGGTC
GATCTGCTGG CCCGCTGGCA GGCCACCAAG GACCTGAGCC TGGGCCTGAA CCTCAACAAC
CTGTTCGATC GCAAGTACTA CGAGCGCTCG TTCAACAGCG TCTGGGTAAT GCCCGGCGAT
CCCCGCAACC TCAGCGTCAA CCTCACCCTC AACCTGTGA
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| Protein sequence | MRAVPALLAS LLVPCALAGE SPAQLEDSII SASPELADGP VQGYRATRSA SATRTDTPIN
EIPQAISVVP AQVLEDLGSS RIDRALDFAG GVSRQNNFGG LTFLNYSVRG FTTGELYRNG
FAINRGSYSS PDASAIERLE VLKGPAAALY GRGDPGGLVN IVTKRPQQEA FTQFKASAGR
WDRYRSSLDV NTPLNDEGTL LSRVNLAVED NGSFRDHVGN QRQIVNPSLS WQLSPDTLLM
IDSEFSRTDS VFDRGIPAVD GKMGAVKRST FLGEPNDGEI RNDNQLLQVS LEHFLSDAWK
LRLASHYSQG TLDGNSSEPS RLIGDQVTRF YRERSFEWND SITQAELHGQ FELAGWQHQT
LLGLEYENYR NSQKYPQSVT GLGYGQNIYN PIYGQPKPPL VNPNDFHEHT ESYALNLQDQ
ITFSERWSGL LGVRLERFEQ TARNRSTRVS NEQTKEVATP RAGVLYQLTP EVGVFANASM
SFKPNTIGAQ GQVFKPEKGL GYETGLKLDL FDSRLGATVA LFHIEKENVL TADPNNPGDS
IAAGKARSQG LDLQVSGQLT DALRVIGAYA YIDAEVTKDN SIPEGSDLLG IARNSASLMG
VYQFQGGSLQ GSEFGAAVNY VGDRSGQTGS NFELPAYTTV DLLARWQATK DLSLGLNLNN
LFDRKYYERS FNSVWVMPGD PRNLSVNLTL NL
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