Gene Pmen_0876 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPmen_0876 
Symbol 
ID5108970 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas mendocina ymp 
KingdomBacteria 
Replicon accessionNC_009439 
Strand
Start bp996301 
End bp997110 
Gene Length810 bp 
Protein Length269 aa 
Translation table11 
GC content64% 
IMG OID640502092 
ProductABC transporter related 
Protein accessionYP_001186376 
Protein GI146305911 
COG category[Q] Secondary metabolites biosynthesis, transport and catabolism 
COG ID[COG1127] ABC-type transport system involved in resistance to organic solvents, ATPase component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones28 
Plasmid unclonability p-value0.930987 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones48 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCGCCG AGCACGAGTA CGCGATCGAG TTGCAGGGCG TCAGCTTTCA GCGCGGTACG 
CGGGCGATCT TCGACAAGGT CGACATCCGC ATTCCGCGCG GCAAGGTCAC CGGTATCATG
GGGCCTTCGG GTTGCGGCAA GACCACGCTG TTGCGTCTGA TCGCCGCCGA GCTGCGGCCG
TCCGCCGGCG AGGTGCGGGT GGCGGGCGTC AATCTGCCGA GCCTGTCGCG TGACGAACTG
TTCGACATGC GCAAGCAGAT GGGCGTGCTG TTTCAGAGTG GTGCGCTGTT CACCGATCTC
GACGTGTTCG AGAACGTGGC CTTTCCGCTG CGCGTGCACA CCCAGCTGCC GGAAGAGATG
ATTCGCGACA TCGTGCTGAT GAAGCTGCAG GCCGTTGGTC TGCGCGGTGC GCTGGAGTTG
ATGCCCGACG AGCTGTCCGG TGGCATGAAG CGCCGCGTGG CGCTGGCCCG AGCCATCGCG
CTCGATCCGC AGATTCTCCT GTACGACGAG CCCTTCGTCG GGCAGGACCC CATTGCCATG
GGCGTGCTGG TGCGGCTGAT CCGTCTGCTC AACGATGCCT TGGGCATCAC CAGCGTGGTG
GTGTCCCACG ATCTGGCGGA AACCGCCAGC ATCGCCGACT ACATCTACGT GGTCGGTGAT
GCCCAGGTGC TGGGCCATGG TACGCCGGCC GAGCTGATGG AGTCGGATAA CCCGCGCATT
CGCCAGTTCA TGAAAGGTAC CCCGGATGGT CCGGTGCCGT TCCATTATCC GGCACCGGAC
TACCGCGAAG ATCTGTTGGG GAGAGGTTGA
 
Protein sequence
MSAEHEYAIE LQGVSFQRGT RAIFDKVDIR IPRGKVTGIM GPSGCGKTTL LRLIAAELRP 
SAGEVRVAGV NLPSLSRDEL FDMRKQMGVL FQSGALFTDL DVFENVAFPL RVHTQLPEEM
IRDIVLMKLQ AVGLRGALEL MPDELSGGMK RRVALARAIA LDPQILLYDE PFVGQDPIAM
GVLVRLIRLL NDALGITSVV VSHDLAETAS IADYIYVVGD AQVLGHGTPA ELMESDNPRI
RQFMKGTPDG PVPFHYPAPD YREDLLGRG