| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_0870 |
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| Symbol | |
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| ID | 5108964 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | - |
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| Start bp | 991098 |
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| End bp | 992591 |
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| Gene Length | 1494 bp |
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| Protein Length | 497 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 640502086 |
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| Product | RNA polymerase factor sigma-54 |
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| Protein accession | YP_001186370 |
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| Protein GI | 146305905 |
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| COG category | [K] Transcription |
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| COG ID | [COG1508] DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog |
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| TIGRFAM ID | [TIGR02395] RNA polymerase sigma-54 factor |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 0.252205 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 40 |
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| Fosmid unclonability p-value | 0.87298 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAACCAT CGCTAGTCCT CAAGATGGGC CAGCAGCTGA CGATGACCCC GCAGCTGCAA
CAGGCTATCC GCCTCCTCCA GTTGTCGACC CTGGACCTGC AACAGGAAAT CCAGGAAGCC
CTGGAATCCA ACCCCATGCT CGAGCGCCAG GAAGACGGCG ACGACTTCGA CAACAGCGAC
CCCATGGCCG ACGGCGCAGA GAGCGCCACT CCTTCCCCAG CCAAGGAGGA GAGCTACCAG
GAAACCGCGC CGACGGTGGA CAACCTGGAA GAGGGCGAAT GGGGCGAACG CATCCCCAAC
GAGCTGCCGG TCGACACCGC CTGGGAAGAC ATCTACCAGA CCAGCGCCAG CAGCCTGCCG
AGCAATGACG ACGACGAGTG GGATTTCACC ACTCGTACTT CCAGCGGCGA GAGCCTGCAG
AGCCATCTGC TCTGGCAGCT GAACCTGGCC CCCATGTCGG ACAAGGACCG GCTGATCGCC
GCCACCCTGA TCGACTGCAT CAACAACGAC GGCTACCTGG AAGAATCGCT CGAAGAAGTC
ACCGACTCCT TCGACCCCGA ACTGGACATC GAGCTGGACG AAGTGGAAGT GGTGCTGCAC
CGCATCCAGC AGTTCGAACC CGCCGGCATC GGCGCGCGCA ACCTGCGTGA ATGCCTGCTG
CTGCAACTGC GCCAGCTGCC CGCCAAAACA CCCTGGCTCA GTGAAACCCA GCGCGTGGTC
AGCGACTATC TGGAGCTGCT CGGCAGCCGC GACTACGCCC AGCTGATGCG CCGCACCAAA
CTCAAGGAAG ACGAGCTCAA GCAGGTCATC GACCTGATCC AGCGCCTCAA TCCGCGCCCG
GGTTCGCAGA TCGAATCCAG CGAGCCGGAA TACGTGGTGC CGGACGTGAT CGTACGCAAG
CACAACGACC GCTGGCTGGT GGAACTGAAC CAGGAGGCGA TGCCGCGCCT GCGCGTCAAC
CCGCAATATG CAGGCTTCGT CAAACGCGCC GACTCCAGCG CCGACAACAC CTTCATGCGC
AATCAGCTGC AGGAGGCGCG CTGGTTCATC AAGAGCCTGC AGAGCCGCAA CGAGACGCTG
ATGAAGGTGG CCACGCAGAT CGTCGAGCAT CAGCGCGGCT TCCTCGACTA TGGCGACGAG
GCGATGAAGC CTCTGGTTCT GCACGATATC GCCGAGGCGG TGGGCATGCA CGAGTCGACC
ATCTCACGCG TCACCACACA GAAGTTCATG CACACCCCGC GTGGCATTTA CGAGCTGAAA
TATTTCTTCT CCAGCCATGT CAGCACCTCC GAGGGCGGCG AATGCTCGTC CACCGCGATC
CGCGCCATCA TCAAGAAACT GGTCGCCGCA GAAAACGCGA AAAAGCCGTT GAGCGACAGC
AAGATCGCTG GTTTACTGGA GGCACAAGGC ATCCAAGTCG CCCGTCGGAC GGTCGCCAAG
TACCGCGAGT CCCTCGGCAT AGCGCCCTCC AGTGAGCGCA AGCGACTGAT GTAG
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| Protein sequence | MKPSLVLKMG QQLTMTPQLQ QAIRLLQLST LDLQQEIQEA LESNPMLERQ EDGDDFDNSD
PMADGAESAT PSPAKEESYQ ETAPTVDNLE EGEWGERIPN ELPVDTAWED IYQTSASSLP
SNDDDEWDFT TRTSSGESLQ SHLLWQLNLA PMSDKDRLIA ATLIDCINND GYLEESLEEV
TDSFDPELDI ELDEVEVVLH RIQQFEPAGI GARNLRECLL LQLRQLPAKT PWLSETQRVV
SDYLELLGSR DYAQLMRRTK LKEDELKQVI DLIQRLNPRP GSQIESSEPE YVVPDVIVRK
HNDRWLVELN QEAMPRLRVN PQYAGFVKRA DSSADNTFMR NQLQEARWFI KSLQSRNETL
MKVATQIVEH QRGFLDYGDE AMKPLVLHDI AEAVGMHEST ISRVTTQKFM HTPRGIYELK
YFFSSHVSTS EGGECSSTAI RAIIKKLVAA ENAKKPLSDS KIAGLLEAQG IQVARRTVAK
YRESLGIAPS SERKRLM
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