Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pmen_0853 |
Symbol | gatB |
ID | 5108947 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas mendocina ymp |
Kingdom | Bacteria |
Replicon accession | NC_009439 |
Strand | - |
Start bp | 972478 |
End bp | 973923 |
Gene Length | 1446 bp |
Protein Length | 481 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 640502069 |
Product | aspartyl/glutamyl-tRNA amidotransferase subunit B |
Protein accession | YP_001186353 |
Protein GI | 146305888 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0064] Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit (PET112 homolog) |
TIGRFAM ID | [TIGR00133] glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, B subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 32 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 48 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCAATGGG AAACCGTAAT CGGGCTCGAG ATCCACGCTC AGCTCAGCAC GCAATCGAAG ATCTTCTCGG CCAGCGCCAC CAGCTTCGGC GCCGAGCCCA ACACCCAGGC CAGCCTGATC GACCTCGGCA TGCCCGGCAC CCTGCCGGTG CTCAACGCCG AGGCGGTGCG CATGGCGGTG AAATTCGGCC TGGCGATCGA CGCGCACATC GCGCCGCAGA ACGTCTTCGC CCGTAAGAAC TACTTCTATC CGGACCTGCC CAAGGGCTAC CAGACCAGCC AGATGGATCA CCCCATCGTC GGCAAGGGCC ATCTGGACAT CACCCTGGAA GACGGCACCG TCAAGCGCAT CGGCATCACC CGCGCGCACC TGGAAGAGGA CGCCGGCAAG AGCCTGCACG AAGACTTCCA CGGCATGAGC GGCATCGACC TCAACCGCGC CGGTACGCCG CTGCTGGAGA TCGTTTCCGA GCCGGACATC CGTTCGGCCA AGGAAGCCGT GGCCTATGTG AAGGCCATCC ACGCCCTGGT GCGTTATCTC GGCATCTGTG ACGGCAACAT GGCCGAGGGC TCGCTGCGCT GCGACTGCAA CGTTTCCGTG CGCCCGAAAG GCCAGGAAGC CTTCGGCACC CGCGCCGAGA TCAAGAACGT CAACTCCTTC CGCTTTATCG AGAAGGCGAT CAACCACGAG ATCCAGCGCC AGATCGAGCT GATCGAGGAC GGCGGCAAGG TCATACAGGA AACCCGCCTG TACGACCCGA ACAAGGATGA GACCCGCTCC ATGCGCGGCA AGGAAGAAGC CAACGACTAC CGTTACTTCC CCTGCCCCGA TCTGCTGCCG GTGGTGATCG AGCAGAGCTT CCTCGACGAA GTGCGTAGCC AGCTGCCGGA GCTGCCGACG CAGAAGCGCG AGCGCTTCCA GAGCCAGTAC GGTCTGTCCA CCTACGACGC CAGCGTGCTC TCGGCCAGCC GCGAGATGGC CGAGTACTTC GAAGAAGTGG CCAAGGTCTG CGGCGATGCC AAGCTGGCGG CCAACTGGGT GATGGGCGAG CTGTCCAGCC TGCTCAACAA GGAAGGTCTG GAGATCGAGC AGTCGCCGGT TTCCGCCGAG CACCTGGGCG GCATGATCCT GCGCATCAAG GACAACACCA TCAGCGGCAA GATCGCCAAG ATGGTGTTCG AAGCCATGGC CGCCGGTGAA GGCAGCGCCG ATGCGATCAT CGAGAGCAAG GGCCTCAAGC AGGTCACCGA CAGCGGCGCC ATCGAGGCGA TGCTCGACGA GGTGCTGGCC GCCAACGCCG AGCAGGTCGA GCAGTACCGC GCCAGCGACG AAGCCAAGCG CGGCAAGATG TTCGGCTTCT TCGTCGGCCA GGCCATGAAA GCCTCCAAGG GCAAGGCCAA CCCGGGGCAA GTGAACGAAC TGCTGAAGAA GAAGCTCGAA GGCTGA
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Protein sequence | MQWETVIGLE IHAQLSTQSK IFSASATSFG AEPNTQASLI DLGMPGTLPV LNAEAVRMAV KFGLAIDAHI APQNVFARKN YFYPDLPKGY QTSQMDHPIV GKGHLDITLE DGTVKRIGIT RAHLEEDAGK SLHEDFHGMS GIDLNRAGTP LLEIVSEPDI RSAKEAVAYV KAIHALVRYL GICDGNMAEG SLRCDCNVSV RPKGQEAFGT RAEIKNVNSF RFIEKAINHE IQRQIELIED GGKVIQETRL YDPNKDETRS MRGKEEANDY RYFPCPDLLP VVIEQSFLDE VRSQLPELPT QKRERFQSQY GLSTYDASVL SASREMAEYF EEVAKVCGDA KLAANWVMGE LSSLLNKEGL EIEQSPVSAE HLGGMILRIK DNTISGKIAK MVFEAMAAGE GSADAIIESK GLKQVTDSGA IEAMLDEVLA ANAEQVEQYR ASDEAKRGKM FGFFVGQAMK ASKGKANPGQ VNELLKKKLE G
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