Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pmen_0831 |
Symbol | |
ID | 5108925 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas mendocina ymp |
Kingdom | Bacteria |
Replicon accession | NC_009439 |
Strand | - |
Start bp | 945566 |
End bp | 946654 |
Gene Length | 1089 bp |
Protein Length | 362 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 640502047 |
Product | tRNA (uracil-5-)-methyltransferase |
Protein accession | YP_001186331 |
Protein GI | 146305866 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG2265] SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase |
TIGRFAM ID | [TIGR02143] tRNA (uracil-5-)-methyltransferase |
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Plasmid Coverage information |
Num covering plasmid clones | 33 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 50 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGTGCCC CCGTATTCGA CCCCGCCACC TACGACGCCC AGCTCGCCGA GAAGCAGCAG CGCCTGATCG AGCTGCTGGC GCCCTTCGCC GCTCCCGAGC CCGAGGTGTT CGATTCGCCG CGCGAGCACT ACCGCCTGCG CGCCGAGTTC CGCCTGTGGC GTGAAGACGG CCAGCGCCAC TACGCGATGT TCGCGCCGGG CGACAAGCAC ACGCCGATCC TGCTCGACGA CTTCCCCATC GCCAGCCTGC GCATCAACGA GCTGATGCCG CGCCTGCGCG CCGCCTGGCG GGCCAGCGAG GCGCTGTCGT TCAAGCTGTT CCAGGTGGAA TTTCTCACCA CCCTGGCTGG CGACGCGCTG ATCACCCTGG CCTACCATCG CCCGCTGGAC GAGGCCTGGC AGGCCGCGGC GGAAAAACTG GCCAGCGAGC TGAACGTCAG CCTGGTCGGC CGCTCGCGCG GCCAGCGCCT GGTGATCGGC CGCGACTACG TCGAAGAGGA ACTCACCGTG GCCGGGCGCC GCTTCCGCTA TCGCCAGCCG GAAGGTGCCT TCACCCAGCC CAACGGCGCG GTGTGCGAGA AGATGCTGGG CTGGGCGTAT GAGGCTCTCG GCGAACGCGA CGACGACCTG CTGGAGCTGT ATTGCGGCAA CGGCAACTTC ACCCTGCCGC TGGCCACCCG CGTGCGCCGC GTGCTGGCCA CCGAAATCAG CAAGACCTCG GTGAACGCCG CCCTGGCCAA CCTGGCTGAC AACGGCGTGA ACAACGTCGA GCTGGTGCGC CTGTCCGCCG AGGAGCTGAC CCAGGCGCTG AACGAGGTGC GCCCGTTCCG CCGCCTGGCC GGCATCGACC TGAAAAGCTA CGACTTCGGC AGCGTCTTCG TCGACCCGCC GCGCGCCGGG ATGGACCCGG ACACCTGCGA GCTGACCCGG CGCTTCGAGC GCATCCTGTA CATCTCCTGC AACCCCGAGA CCCTGGCCGC CAACATCGCC CAGCTGAGCG ACACCCACCA GGTGACGCGC TGCGCCCTGT TCGACCAGTT CCCCTACACC CACCATATGG AAGCGGGTGT ATTGCTGGAG CGGCGCTGA
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Protein sequence | MSAPVFDPAT YDAQLAEKQQ RLIELLAPFA APEPEVFDSP REHYRLRAEF RLWREDGQRH YAMFAPGDKH TPILLDDFPI ASLRINELMP RLRAAWRASE ALSFKLFQVE FLTTLAGDAL ITLAYHRPLD EAWQAAAEKL ASELNVSLVG RSRGQRLVIG RDYVEEELTV AGRRFRYRQP EGAFTQPNGA VCEKMLGWAY EALGERDDDL LELYCGNGNF TLPLATRVRR VLATEISKTS VNAALANLAD NGVNNVELVR LSAEELTQAL NEVRPFRRLA GIDLKSYDFG SVFVDPPRAG MDPDTCELTR RFERILYISC NPETLAANIA QLSDTHQVTR CALFDQFPYT HHMEAGVLLE RR
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