| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_0820 |
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| Symbol | |
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| ID | 5108914 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | - |
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| Start bp | 931925 |
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| End bp | 934009 |
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| Gene Length | 2085 bp |
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| Protein Length | 694 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 640502036 |
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| Product | Rhs element Vgr protein |
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| Protein accession | YP_001186320 |
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| Protein GI | 146305855 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3501] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR01646] Rhs element Vgr protein
[TIGR03361] type VI secretion system Vgr family protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.476122 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 41 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTGGATG CCAACCAGGC GCATATCACC CTCGCCATTC CCGCCGTCGA CAACGACCTG
CAGGTACTGA GCTTCGAGGG GCGCGAAGCG CTCAACAAGC CCTACCGTTT CGATATCGAG
CTGGTCAGCC AGCGCGCCGA TCTCGACCTC GACGCGCTGA TCAACCAGAC CGCCTATCTG
GCCTTCGGCC CCTCCGGCAA GGGCGTGCAT GGCGTGCTCT ACGCCATCGA ACAGGGCGAC
TCGGGCAAGC GCCTGACGCG CTACCGCATC AGCCTGCGGC CGCAGCTCGC CTATCTGGCT
CATCGCCACA ACCAGCGCAT CTTCCAGCAC CTCACCGTGC CGCAGATCAT CGGCCAGATC
CTCGAAGAGC ACGGCATCCA GAGCGACGCC TATCAGTTCC AGCTCGGTTA CCTCTACCCT
GAACGCGACT ACTGCGTGCA GTACGACGAG AGTGACCTGC ACTTCATCCA GCGCCTGTGC
GAGGAAGAAG GCATCAGCTT CCACTTCCAG CACAGCGAAG ACAGCCACCG CCTGGTGTTC
GGCGACGACG CCAGCGTCTT CCCCAAGCTC GATCCGCTGA ATTACCAGCA AGGCAGCGGC
CTGGCCGCCG ATCACGAAGT GGTACGCGCC TTCGGCGTGC GCCTGGAAAC CCGAAGCACC
CATGCCACCT GGCGCGACTA CGACTTCGAG CAGCCCAAAC TGAGGATGGA AGCGGACTAC
CGCAGCGAGT TCAGCCCGGC GCTGGAAGTC TACGACTACC CTGGTCGCTT CACCGACCGC
ACGCGCGGCA AGCACCTGGC CAAACGGAGC CTGGAGCGCC TGCGCAGCGA CTACGAACTG
GCCGAAGGCA AGAGCGATGC GTACCTGATC AGCGGCCACT TCCTCGCCCT GGCCGGCCAC
CCGCGCCAGC AGTGGAACGA TCTGTGGCTA CTCGATGAAG TGATTCACGA AGGCAAGCAG
CCGCAGGTGC TGGAGGAGTC GGTCACCAGC AACACCCAGC CTGGCGATGG CTTCCAGCAG
GGCTACCGCA ACCGCTTCAC CGCCACGCCC TGGGACATCC CCTACCGCCC GGCGCTCGAA
CATCGCAAAC CCAAGGTACT GGGTAGCCAG ACGGCCGTGG TCACCGGCCC GGCTGGCGAG
GAAATCCACT GCGACCAGTA CGGCCGAGTG AAGGTGCAGT TCCATTGGGA CCGCGAAGGC
CTGGGCAACG ACACCACCAG TTGCTGGCTG CGCGTGGCCT CCAACTGGGC CGGCAAGGCC
TACGGCGGCA TCGCCATTCC CCGGGTGGGC ATGGAGGTGC TGGTCACCTT CCTCGAAGGC
GACCCCGACC AGCCGCTGAT CACCGGCTGC CTGTACCACA CCGAGCACGT CGTGCCTTAC
GACCTGCCGG CGAACAAGAC CCGCAGCGTC TTCAAGACCC TGAGCAGCCC GGGTGGTGGC
GGCTACAACG AATTTCGCAT CGAAGACCGC AAGGGCGCCG AGCAGATCTA CATCCACGCC
CAGCGCGACT GGGACGAGAA CATCGAAAAC AACCAGAAGA TCCGCGTCGG CAACGAGCGC
CACGATACGG TCGAAGCCAA CAGCTACACC GAGCTTCAGG CCGAAGAACA CCGCACCACC
GACCTCGACC GCAAAGTGGA AGTGCGAGCC AACGACCACC TCACCGTCGC CGTCACCCAG
CACAACAAGA TCGGTACCGG CCAGTTCATC GAAGCCGGCA ACGAGATTCA CTACAACGCC
GGCAGCAAGG TGGTGATCGA CGCTGGCATG GAGCTCACCG CCGCAGGTGG CGGCAGCTTC
CTCAAGCTCG ACCCGAGTGG CGTGACGCTG AGTGGGGCGA CGATCAAGAT GAATTCGGGG
GGCGGGCCGG GTAGTGGGTC GGGGTTGAAA ATACTGGGGC CGTTGATTCC GTGGGCGGCG
GATGCGGATA AGGCCGGGCA GAAACCCGAG CTGGCATTGG CAAACGCCCA GTTGCAGCTT
GCCGTCAAGG CTCGCCAACT GGCTGCAAGC CGCTGCCCCA TCTGTGAGGC TTGCCGTGAA
GGGCTGTGCG ATCTGCCGAC TCGGGCCGGA GGGGCTCAAG GATGA
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| Protein sequence | MLDANQAHIT LAIPAVDNDL QVLSFEGREA LNKPYRFDIE LVSQRADLDL DALINQTAYL
AFGPSGKGVH GVLYAIEQGD SGKRLTRYRI SLRPQLAYLA HRHNQRIFQH LTVPQIIGQI
LEEHGIQSDA YQFQLGYLYP ERDYCVQYDE SDLHFIQRLC EEEGISFHFQ HSEDSHRLVF
GDDASVFPKL DPLNYQQGSG LAADHEVVRA FGVRLETRST HATWRDYDFE QPKLRMEADY
RSEFSPALEV YDYPGRFTDR TRGKHLAKRS LERLRSDYEL AEGKSDAYLI SGHFLALAGH
PRQQWNDLWL LDEVIHEGKQ PQVLEESVTS NTQPGDGFQQ GYRNRFTATP WDIPYRPALE
HRKPKVLGSQ TAVVTGPAGE EIHCDQYGRV KVQFHWDREG LGNDTTSCWL RVASNWAGKA
YGGIAIPRVG MEVLVTFLEG DPDQPLITGC LYHTEHVVPY DLPANKTRSV FKTLSSPGGG
GYNEFRIEDR KGAEQIYIHA QRDWDENIEN NQKIRVGNER HDTVEANSYT ELQAEEHRTT
DLDRKVEVRA NDHLTVAVTQ HNKIGTGQFI EAGNEIHYNA GSKVVIDAGM ELTAAGGGSF
LKLDPSGVTL SGATIKMNSG GGPGSGSGLK ILGPLIPWAA DADKAGQKPE LALANAQLQL
AVKARQLAAS RCPICEACRE GLCDLPTRAG GAQG
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