Gene Pmen_0775 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPmen_0775 
Symbol 
ID5108869 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas mendocina ymp 
KingdomBacteria 
Replicon accessionNC_009439 
Strand
Start bp870765 
End bp872468 
Gene Length1704 bp 
Protein Length567 aa 
Translation table11 
GC content57% 
IMG OID640501991 
Producttype IV-A pilus assembly ATPase PilB 
Protein accessionYP_001186275 
Protein GI146305810 
COG category[N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG2804] Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB 
TIGRFAM ID[TIGR02538] type IV-A pilus assembly ATPase PilB 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value0.621188 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones52 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAACGAAA GCGTATCCCT CTCCGGCCTG GCCAAGCAGA TGGTGCTGGC CGAGCTACTG 
GACGAAAAAG CCGCTCAACA GGCGCAACTG CAAGCTCAGC GCAATAAGCT GTCGCTGGTC
ACTTACCTGG TGCAGAACAA GCTGGTAAAG AGCCGTGCCC TGGCCGAATT AGCCGCCGAA
CAATTCGGCG TGGCTTTTTT TGACCTTAAC GCCATCGATA AAGAAGGACA GCCCAAGGAG
CTGGTCAGCG AGAAGTTGGT ACGCCAGCAT CGCGTACTGC CGCTATGGCG ACGTGGCAAC
AAGCTGTTCG TCGGGCTTTC CGACCCGACC AATCACCAGG CGGTCACGGA TGTGCAGTTC
AGCACCGGTC TCAATACCGA GGCGATTCTG GTCGAGGATG ACAAGCTGGG CGATGCCATT
GACAAGTTCT TCGACTCAGC CAATAGCGGC ATGGAGGATC TGGCCGACGT CGACCTGGAT
GGCTTGGACG TCGAGGCAGT AGATGATGAC AGGCCTGCCG GTGATGGCGG GGCCGATGCC
GATGATGCGC CAGTGGTGCG CTTCGTAAAC AAGATGCTAC TGGATGCAAT CAAAGGGGGC
TCATCGGACC TGCACTTCGA GCCGTACGAA AAGGCCTACC GGGTGCGCTT CCGTACCGAC
GGCCTGCTAC ATGAGGTAGC CCGCCCGCCG ATCCAGCTTG CGCCGCGCAT TTCCGCCCGT
CTCAAGGTAA TGGCCGCGCT GGATATCTCC GAGCGGCGCA AACCGCAGGA TGGCCGAATC
AAGATGAAAA TCTCAAAGAC CAAGGCCATC GACTTTCGCG TCAACACCCT GCCAACTCTG
TGGGGCGAGA AGATCGTGAT GCGGATTCTC GACCCCACCA GTGCACAGAT GGGCATCGAT
GCTCTAGGTT ACGAGGAAGC CCAGAAAGAG CTCTACCTAA GCGCCCTCAA ACAACCGCAG
GGCATGATTC TGGTCACCGG CCCTACGGGT TCCGGCAAGA CCGTATCGCT CTATACCGGC
CTGAATATTC TCAATACACC GGATGTGAAT ATCTCCACTG CCGAAGACCC TGTAGAGATC
AACCTGGAGG GCATCAATCA GGTCAACGTC AACCCCAAGC AGGGCATGGA TTTCACCCAG
GCGCTGCGCG CCTTCCTGCG CCAGGATCCG GACATCATCA TGGTCGGCGA GATTCGGGAC
CTAGATACGG CGTCCATTGC CGTCAAGGCC GCACAAACCG GCCATATGGT CATGTCTACC
CTTCACACCA ACAGCGCCGC GGAAACCCTG ACCCGCCTGC GCAATATGGG CGTGCCATCC
TTCAATATCG CCACCTCGGT CAACCTGATC ATCGCCCAGC GTCTGGCGCG CAAGCTGTGC
AACAGCTGCA AGAAGGAAGT AAACGTACCG CGTGAAACCC TGTTGGCGGA AGGCTTCCCT
GAAGACAAAA TCGGTACTTT CAAGATCTAC GGCCCGGTCG GTTGCGAGAA CTGCAAGGGC
GGTTACAAAG GCCGAGTCGG TATTTATGAA GTAGTTAAAA ACACGCCCAA CCTGCAGCGG
ATTATCATGG AGGAAGGCAA CTCCATCGAT ATTGCCGCGC AGATGCGTAA AGACGGCTTT
AATGACCTAC GCACCTCCGC TTTGCTCAAG GCCATGCAAG GGGTTACCAG CCTTGAGGAA
GTCAACCGCG TGACCAAGGA TTAA
 
Protein sequence
MNESVSLSGL AKQMVLAELL DEKAAQQAQL QAQRNKLSLV TYLVQNKLVK SRALAELAAE 
QFGVAFFDLN AIDKEGQPKE LVSEKLVRQH RVLPLWRRGN KLFVGLSDPT NHQAVTDVQF
STGLNTEAIL VEDDKLGDAI DKFFDSANSG MEDLADVDLD GLDVEAVDDD RPAGDGGADA
DDAPVVRFVN KMLLDAIKGG SSDLHFEPYE KAYRVRFRTD GLLHEVARPP IQLAPRISAR
LKVMAALDIS ERRKPQDGRI KMKISKTKAI DFRVNTLPTL WGEKIVMRIL DPTSAQMGID
ALGYEEAQKE LYLSALKQPQ GMILVTGPTG SGKTVSLYTG LNILNTPDVN ISTAEDPVEI
NLEGINQVNV NPKQGMDFTQ ALRAFLRQDP DIIMVGEIRD LDTASIAVKA AQTGHMVMST
LHTNSAAETL TRLRNMGVPS FNIATSVNLI IAQRLARKLC NSCKKEVNVP RETLLAEGFP
EDKIGTFKIY GPVGCENCKG GYKGRVGIYE VVKNTPNLQR IIMEEGNSID IAAQMRKDGF
NDLRTSALLK AMQGVTSLEE VNRVTKD