| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_0729 |
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| Symbol | |
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| ID | 5108823 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | - |
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| Start bp | 818038 |
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| End bp | 819387 |
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| Gene Length | 1350 bp |
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| Protein Length | 449 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 640501942 |
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| Product | MATE efflux family protein |
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| Protein accession | YP_001186229 |
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| Protein GI | 146305764 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0534] Na+-driven multidrug efflux pump |
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| TIGRFAM ID | [TIGR00797] putative efflux protein, MATE family |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 0.671906 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 46 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTCGCCC TGCTCGACGC CTGGCGCCAC GCCCCCACCC AACGCAAGGT CTGGGCGTTG
GCCGCACCGA TGATCCTGTC CAACCTCTCG GTGCCCATGG TGGCACTGGT CGATACGGCC
GTGGTCGGTC ACCTGCCGCA CGCCCATCAA CTGGCGGCGG TGGCGGTGGG CGGCAGCCTC
TATACCCTGC TGACCTGGGC CATGGGCTTT CTGCGCATGG GCAGCACGGG CTTCGCCGCC
CAGGCGGCGG GCCGCGGCGA TGGCGGTGCG CTGCGTCAGG TGCTGGTACA GGGTCTGAGC
CTGGGCGTGC TGCTGGCCCT GCTGCTGAGC CTGCTGGCCT TGCCGCTGAG CAATGCCGCG
CTGCATCTGA TGCAGCCCTC CGCCGAGCTG GATGCGCTGG CGCGGCAGTA CTTCCAGATC
CGTCTGTTCG GCCTGCCCGC CAGCCTGGCC AGCTACGCCC TGGTCGGCTG GCTGCTAGGC
ACGCAGAGCG CCCGTGGCCC GCTGGCCATT CTGCTCACCG CCAACCTGCT CAATGTCGCG
CTGGACCTGC TGTTCGTGCT CGGTCTCGAA TGGGGCGTGG CTGGCGCGGC CTGGGCCTCG
GTAATCGCCG AATGGAGCGG CGCCCTGCTC GGCCTGTGGC TGGCCCGTGG CGCGATCGCA
GGCTTTCCCG GCCGTCTCGA TAGCCGCGCG CTGCGGCACT GGAGCAGCTG GCGCCCACTG
CTGGCGGTCA ACCGCGACAT CTTCATCCGC ACCCTGGCCC TGCAGCTGGT GTTCTTTCTC
GTCACCGTGC AGGGCACGCG CCTGGGCGAC GCCACGGTGG CGGCCAATGC CCTGCTGCTC
AACGGCCTGA CCCTAACCGC CTACGCCCTC GACGGCCTGG CGCATGCCGT GGAGGCCCTG
TGCGGTCACG CCCTGGGCGC CCGCGACCGC GACGCACTGC GCCGTTCACT GCTGGTGGCC
GGCGCCTGGT CGCTGCTGGC CAGCGCCGGC TTCGCCCTGT TCTTCCTGCT CGGCGGACAC
TGGTTCGTCT GGATGCTGAC GGACATCGCC GAAGTGCGCG AACTGGCCCT GAGCTACCTG
CCGTACCTGG CCCTGCTGCC GCTGCTGACG GTGTGGAGCT ACCTGCTCGA CGGCCTGTTT
ATCGGCGCCA CTCGAGCTAG AGAAATGCGC GACGCGATGC TCATCGCCCT GGCCCTGAGC
GTGCCGCTGG GCTGGTGGCT GCAATGCCTG GGCAATCACG GGCTGTGGTT GGCATTTCTG
GCCTTCATGG GACTGCGCAG CCTGGTGCTG GCTGGCTATG CTTGGCAGCT GTCGCGGCGC
GACCTGTGGT TCGCCCGAGC CGACCGCTGA
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| Protein sequence | MFALLDAWRH APTQRKVWAL AAPMILSNLS VPMVALVDTA VVGHLPHAHQ LAAVAVGGSL
YTLLTWAMGF LRMGSTGFAA QAAGRGDGGA LRQVLVQGLS LGVLLALLLS LLALPLSNAA
LHLMQPSAEL DALARQYFQI RLFGLPASLA SYALVGWLLG TQSARGPLAI LLTANLLNVA
LDLLFVLGLE WGVAGAAWAS VIAEWSGALL GLWLARGAIA GFPGRLDSRA LRHWSSWRPL
LAVNRDIFIR TLALQLVFFL VTVQGTRLGD ATVAANALLL NGLTLTAYAL DGLAHAVEAL
CGHALGARDR DALRRSLLVA GAWSLLASAG FALFFLLGGH WFVWMLTDIA EVRELALSYL
PYLALLPLLT VWSYLLDGLF IGATRAREMR DAMLIALALS VPLGWWLQCL GNHGLWLAFL
AFMGLRSLVL AGYAWQLSRR DLWFARADR
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