Gene Pmen_0645 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPmen_0645 
SymbolrpsF 
ID5109607 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas mendocina ymp 
KingdomBacteria 
Replicon accessionNC_009439 
Strand
Start bp715224 
End bp715646 
Gene Length423 bp 
Protein Length140 aa 
Translation table11 
GC content59% 
IMG OID640501858 
Product30S ribosomal protein S6 
Protein accessionYP_001186145 
Protein GI146305680 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0360] Ribosomal protein S6 
TIGRFAM ID[TIGR00166] ribosomal protein S6 


Plasmid Coverage information

Num covering plasmid clones30 
Plasmid unclonability p-value0.793975 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones22 
Fosmid unclonability p-value0.000526957 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGCGTCATT ACGAAATCAT CTTCCTGGTT CACCCGGACC AGAGCGAGCA AGTCGGCGGC 
ATGGTCGAGC GTTACACCAA GCTGATCGAA GAAGACGGTG GCAAGATTCA CCGCCTGGAA
GACTGGGGCC GTCGTCAGCT GGCTTACGCC ATCAACAACG TCCACAAAGC CCACTACGTG
ATGCTCAACG TAGAGTGCAC CGGCAAGGCC CTGGCCGAGC TGGAAGACAA CTTCCGCTAC
AACGACGCCG TGATCCGTAA CCTGGTCATC CGTCGCGACG AGGCCGTCAC TGGCCAGTCC
GAGATGCTGA AGGCCGAAGA AAACCGCAGT GAGCGCCGCG AGCGTCGTGA ACGTCCTGAA
AACGCCGAGT CCAACGACGG CGATGACAGC GACAGCAACG ACAGCGACAA CGCTGACGAG
TAA
 
Protein sequence
MRHYEIIFLV HPDQSEQVGG MVERYTKLIE EDGGKIHRLE DWGRRQLAYA INNVHKAHYV 
MLNVECTGKA LAELEDNFRY NDAVIRNLVI RRDEAVTGQS EMLKAEENRS ERRERRERPE
NAESNDGDDS DSNDSDNADE