Gene Pmen_0628 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPmen_0628 
Symbol 
ID5109590 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas mendocina ymp 
KingdomBacteria 
Replicon accessionNC_009439 
Strand
Start bp694350 
End bp694892 
Gene Length543 bp 
Protein Length180 aa 
Translation table11 
GC content63% 
IMG OID640501839 
Productoligoribonuclease 
Protein accessionYP_001186128 
Protein GI146305663 
COG category[A] RNA processing and modification 
COG ID[COG1949] Oligoribonuclease (3'->5' exoribonuclease) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones36 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones39 
Fosmid unclonability p-value0.541205 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCAGAACC CCAACAACCT GATCTGGATC GACCTGGAGA TGACCGGCCT GGAGCCGGAG 
CGGGACGTGA TCATCGAAAT GGCCACCATC GTCACCGACA GCGAGCTGAA CGTGCTCGCC
GAGGGGCCGG TGATCGCTAT CCACCAGAGC GACGAGACCC TGGCCGGTAT GGACGAGTGG
AACACCCGCA CCCATGGCCA GAGCGGGCTG ACCCAGCGCG TGCGTGAGAG CCGCATCGAC
ACGGCGACGG CCGAGGCGCA GACCATCGCC TTTCTCGAGC AGTGGGTACC GAAGGGCAAG
TCGCCGATCT GTGGCAACAG CATCGGTCAG GATCGCCGCT TCCTCTACAA GTACATGCCG
GCGCTGGAGG CCTACTTCCA CTACCGCTAC CTGGACGTCT CGACGCTGAA GATTCTCGCC
GGCATGTGGG CGCCGCAGGT CAAGGACAGC TTCCAGAAGA CCGCGACCCA TCAGGCGCTG
GACGATATCC GTGAGTCGAT TGCCGAGCTC AAGCACTATC GTCAGCATTT CCTGAAGGCG
TAG
 
Protein sequence
MQNPNNLIWI DLEMTGLEPE RDVIIEMATI VTDSELNVLA EGPVIAIHQS DETLAGMDEW 
NTRTHGQSGL TQRVRESRID TATAEAQTIA FLEQWVPKGK SPICGNSIGQ DRRFLYKYMP
ALEAYFHYRY LDVSTLKILA GMWAPQVKDS FQKTATHQAL DDIRESIAEL KHYRQHFLKA