| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_0610 |
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| Symbol | |
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| ID | 5109572 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | + |
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| Start bp | 672523 |
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| End bp | 673965 |
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| Gene Length | 1443 bp |
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| Protein Length | 480 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 640501821 |
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| Product | TolC family type I secretion outer membrane protein |
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| Protein accession | YP_001186110 |
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| Protein GI | 146305645 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01844] type I secretion outer membrane protein, TolC family |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 52 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTGCGCA GACTTTCCCT GGCTGTTGCT ATTGCCGCTG CTTCGGTGGG CCTGGCCCAG
GCCGAAGAGG CCCCGCTATC GAGCAAGACC GACCTGGTCA CCGTGTATCA GGAAGCGGCG
AGAAACAACG CCGATATCGC CGCCGCGCGC GCCGATTATC AGGCTCGCCG CGAAGTGGTA
CCGCAGGCCC GTGCCGGGCT GCTGCCCAAC CTTTCCGCAG GCGCCAACTA CGGGGACACG
CGCACTGAAG TCGATTCGCC GAGCGCCACC GTCTCGCGCA GCGGTCTGGT CTATCAGGCC
AACCTCAGCC AGCCACTGTT CCGCGCCGAT CGCTGGTTCC AGCTGCAGGC GGCCGAGGCC
ACCAGCGAAC AGGCTGCTCT GGAGCTGTCC GCCACCGAAC AGAACCTGAT CCTGCAGAGC
GCCGAGACCT ACTTCGCCGT GCTGCGTGCC CAGGACACCC TGGCTTCGAC CAAGGCCGAG
GAGGCGGCAT TCAAGCGTCA GCTGGATCAG GCCAACGAAC GTTTCGACGT CGGGCTTTCC
GACAAGACCG ACGTGCTCGA GGCGCAGGCC GGTTTCGATA CCGCGCGTGC CAACCGCCTG
CTCGCCGAGC GTGCCGTGGA TGACGCCTTC GAAGCGCTGG TGACCCTGAC CAACCGCGAC
TACCTGGCCG TCGAAGGGAT CGTCCACACC CTGCCGGTGC TGGCGCCGAC ACCGAACGAT
GCCAAGGCCT GGGTCGATAC CGCTGCAGCG CAGAACCTCA ACCTGCAGGC CAGCCTGTAT
GCCGTCACGG CTGCTGAAGA GAACCTGCGC CAGCGCAAGG CCGGCCATGC GCCGACCCTG
GACGCCGTGG CCAGCTATCA GAAGGGTGAC AACGACAGCC TGGGCTTCAC CAATTCTGGC
GCCTTTGGCG CGCCGCGCTA CAGCGGCGAC GTCTCCCAGC GCTCCATCGG CCTGCAGCTG
AACATTCCGC TGTACAGCGG CGGCCTGACC AGCTCCCAGG TGCGCGAGGC CTACCAGCGT
CTGGGGCAGA CCGAGCAGCT GCGCGAAAGC CTGCGTCGCC AGGTGGTGCA GAACACCCGC
AACCTGTTCC GCGCAGTGAA CACCGACGTG GAAACCGTGC AGGCCCGTCG TCAGTCGATC
ATCTCCAACC AGAGTGCCCT GGAAGCCACC GAGATCGGTT ATCAGGTCGG TACCCGCAAC
ATCGTCGACG TGCTCGATGC CCAGCGTCAG CTGTACAGCG CCGTGCGCAA CTACAACGAT
GCGCGCTACG ACTACATCCT CAACAACCTG CGCCTGAAGC AGGCCGCCGG CACCCTCAGC
CCGGCCGACC TGGAAGCGCT GGGCAGCTTC CTCAAGCCGG ACTACAACCC GGACGAGGAC
TTCCTGCCGC CGGATCTGGC CTCGGCCGCC GAGTCGCGCC TGCAGGGCAA TCCGGATTTC
TGA
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| Protein sequence | MLRRLSLAVA IAAASVGLAQ AEEAPLSSKT DLVTVYQEAA RNNADIAAAR ADYQARREVV
PQARAGLLPN LSAGANYGDT RTEVDSPSAT VSRSGLVYQA NLSQPLFRAD RWFQLQAAEA
TSEQAALELS ATEQNLILQS AETYFAVLRA QDTLASTKAE EAAFKRQLDQ ANERFDVGLS
DKTDVLEAQA GFDTARANRL LAERAVDDAF EALVTLTNRD YLAVEGIVHT LPVLAPTPND
AKAWVDTAAA QNLNLQASLY AVTAAEENLR QRKAGHAPTL DAVASYQKGD NDSLGFTNSG
AFGAPRYSGD VSQRSIGLQL NIPLYSGGLT SSQVREAYQR LGQTEQLRES LRRQVVQNTR
NLFRAVNTDV ETVQARRQSI ISNQSALEAT EIGYQVGTRN IVDVLDAQRQ LYSAVRNYND
ARYDYILNNL RLKQAAGTLS PADLEALGSF LKPDYNPDED FLPPDLASAA ESRLQGNPDF
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