Gene Pmen_0567 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPmen_0567 
Symbol 
ID5108191 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas mendocina ymp 
KingdomBacteria 
Replicon accessionNC_009439 
Strand
Start bp617504 
End bp620767 
Gene Length3264 bp 
Protein Length1087 aa 
Translation table11 
GC content54% 
IMG OID640501780 
ProductHsdR family type I site-specific deoxyribonuclease 
Protein accessionYP_001186069 
Protein GI146305604 
COG category[V] Defense mechanisms 
COG ID[COG0610] Type I site-specific restriction-modification system, R (restriction) subunit and related helicases 
TIGRFAM ID[TIGR00348] type I site-specific deoxyribonuclease, HsdR family 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0552282 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value2.12216e-12 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGTCGGAAT ACACGGAGGT TGAGCAGCCC TTCCTGCAGC AGCTGCAAGC GCAGGGCTGG 
ACCGTCATCG ACCAAGGTAC AGTCGTACCT CAGGATCCCA TGCCAAGTTT GCGTTCGAGC
TTTCGCCAGT GGCTGCTACC TGAAGTCTTC GATGCGGCCG TCCGTAGCAT CAATCGCACC
GATGACGGCC GGGAGTGGCT AACTGATAAA CAGCTTGATG ACCTGCGTGG GCAGCTGTTA
CGTCAACCCA ACCGCACACT GTTGGAAGCC AACGAAGCCG TGCAGGCATT GTTGTTTAAG
GCGCAAGTGG ATAGCAACGA ACTGACGGGT GAAGCTGACC CAATCGTTCG TTTGATCGAC
TTCCACACAC CTGAGAACAA CCGGTTTCAC GCGATCAACC AATTCCGCAT CGATACGCCG
GGCTGCGTAA GGGCCTTTAT CATCCCGGAC ATTGTTCTGT TCGTGAATGG CATCCCGCTG
GTTGTTGTGG AGTGCAAGAA GGGATCTGCA ACCTGCGCCA ACCCCATGCA GGAAGCCTTT
GTGCAGTTAC AGCGCTATAT GCGTAAGCGT AAGGAAACTG CGGCGGCGGG TTTGACTGAA
GGCGAGCCAC GCCTGTTTCA CAGCAGCCTG TTGTTGATTC GTAGCTGCGG CCTTGAGGCG
GATTACGGCA CGATCACCTC GGGTGAAGAG CACTTCTACG GCTGGAAGAC GCTTTACCCG
GCTAATGATG CTGCTAGCGA GGGTATGAAT GCGCAGCAGC GACTGATTGC AGGCATGTTG
ACCCGGCATA ACCTGCTACA GATCCTGCGC ACCAGCTCGG TATTTATGGA CACTGATGGT
GGGCCGCGAA TTAAGGTTGT GTGTCGCTAT CAGCAGTTCC GCGCTGCAAA CAAAATCATT
GAGCGTCTAC GCAGCGGTAA AACCGCTATG GAGCGCGGCG GCGTCGTGTG GCACACCCAA
GGCTCCGGTA AGTCCCTGAC CATGGTGTTC CTGGCGCGCA TGCTGCGTGC CAGTCGTGAT
CTCAATGACT ACAAGGTGAT TCTAGTCAAC GACCGCCAGG ATTTGGAGGA GCAGCTAGGG
GAGACCGCCA CTTTGATTGG TGGGCGAGTC AATGTGATCG AGACTCGTCA AGATCTGCGT
AAGCACCTAG CCACAGAAAG CTCTGACATC AACATGGTGA TGGTGCACAA GTTTCAGGAG
CACAAGCAGA CGCTCACCAA TACGGTGGCT GAGGCGCTGG GTACTTATCT GGCGATGCCC
TCCGGTAAAA CCTTTGGCGT AGTGAATACC TCTGATCGAA TCATTTTGAT GATCGATGAA
GCACATCGAA CCCAAAGTTC GGACTTGGGC GAGAACTTGT TCGAGGCGTT CCCCAATGCA
ACGCGTATCG CCTTTACCGG CACTCCGCTG CTGACTGAGC GTCATGGGGA GAGGAAAACC
CACAAGCGTT TTGGCGAGTA CATCGACACT TATCGGTTGC TGGACGCAGT AAACGACGGT
GCCACGCTGC AAATTCTGTA TGAAGGCAAA ACCGCCGACA GTGCGCTGAC GGAAAAGCAC
GCATTTGATC AGGCCTTCGA AGACCTCTTT CGTGATCGTA GTGAAGAAGA GCTGTTGGCG
ATCAAGAAGA AATATGGCGC GACGGGCGAC ATCCTTGAGG CTGAGAACCG CATCAACGCA
ATTGCGCGTG ATTTGGTCCG GCACTACATC GATAACATCT TGCCTAACGG TTTCAAGGCT
CAGGTGGTCT GCCATTCCAA GCTCGCGTGT ATTCGTTACC AGGCAGGTAT TGAGGCTGCA
ATTGCTGAGC GTATTGAGCA GGAGCAGGTC AAGACTGCGC CGGATGCTGA CTTGCTGCGG
CGTCTACGCT TCCTGAAAAC AGCTGTGGTG GTGTCTTCGG ACGGCACCAA TGAGGCGGCT
TTTATCACCC AGGCTCGCAA GCAGGCTGCG CGAATGGGGG CCGTTGAGAA TTTCTGCCGT
GGTTTTGATC TGGATGACCC AGACAAGGAG TACAGCGGCA TCGCCTTTTT GATCGTCTGT
GACATGCTCT TGACCGGTTT CGATGCGCCG ATTGAGCAGG TGATGTACAT CGACAAGAAA
CTGCGCGAGC ACACCTTGCT CCAGGCGATT GCTCGTACCA ATCGGGTGAA AAAGGGCAAG
CAGCGTGGCT ATGTGGTGGA TTACATCGGC CTGGCCAACC ACCTGACCGA TGCGCTTACG
CTGTATGCAG CTAGTGATGA GTTGCAGGAG CTGCACGACG GGATGCAGAA CATTACGTCT
GAGTTGCCTG TGCTGGAGGA GCGCTATCAG CGACTGCTGC AGCACTTCAC GGCGCTGGGG
GTAAGGAGCA TAGGTGCTTT TGTGACGGGC ACTTTGTCTG GCCTTGAGGC TGATGCTGCT
GTGGTACATG AAGCGGTAAA AGCCTTGAAG GATGAAAAGC TGCGGGCCGA CTTCGAGGTG
TATCTGAAGA AGTTCCTGAT GAGTATGGAC ATCATCCTGC CACATCCTTC GGCTCAGCCG
TATCGTGTGC CTGCCAAGCG CTTCGGTTAC ATCTTGCAGG TCACTAAAGA GCGTTACAAA
GACGCCAGCC TCGATTTGAG TGGTGCCGGT GAAAAGGTTA AGGCGCTGAT CAATGATCAT
CTGATCAGTT TGGGTATCAA CCCGAAGGTC GAGCCTGTGG AGCTTTTGGC TGAGGACTTT
CTTGAGAAGT TAGCGGCACA TTCCGGCAAG AACGTTGAGG CCAAAGCCAG CGAAATGGAG
CATGCCATTC GCAAGCACTG TACGGTGCAT CATGATGAGG ACCCTGCTTT TTTCAAAAGC
CTTTCCGAGA AAGTCGATGC GTTGATCGAG AAGCATCAGG ATGAGTGGGA CTTGCTGGTT
GAGAAGCTAG CGGAGCTCCG AAGCGAGGCC GTTGCAGGTC GCCAGAAAGG CGAGGAGGGT
ATGAGTAAGG AGGCTACCAC GTTTTATGCA CATATCATCC AGGTCGGATT TGCTGGTGGC
GTTGTCGCCG GGGGCGATAA GGATAAATTC AAGGCCTTGA TGGAAGCGAC GGTGGATTTG
CTTCAGGAGA CCATAGGCAG CATCGACTTC TGGCAGAACC CAGACAAGCA AAAGCGCATT
CGCGGTCTAC TCAAGACGGA GATAAGCAAA ACCGGTATTG ATGAGCTCAA ACAGAATCGT
GAGCGTGTTG CTATTGAAAT CATGAAGTTG GCCAAAAACC GCCATGATGA GTTGACCCGT
GTTGTGCGGG CGGGAATTGC ATGA
 
Protein sequence
MSEYTEVEQP FLQQLQAQGW TVIDQGTVVP QDPMPSLRSS FRQWLLPEVF DAAVRSINRT 
DDGREWLTDK QLDDLRGQLL RQPNRTLLEA NEAVQALLFK AQVDSNELTG EADPIVRLID
FHTPENNRFH AINQFRIDTP GCVRAFIIPD IVLFVNGIPL VVVECKKGSA TCANPMQEAF
VQLQRYMRKR KETAAAGLTE GEPRLFHSSL LLIRSCGLEA DYGTITSGEE HFYGWKTLYP
ANDAASEGMN AQQRLIAGML TRHNLLQILR TSSVFMDTDG GPRIKVVCRY QQFRAANKII
ERLRSGKTAM ERGGVVWHTQ GSGKSLTMVF LARMLRASRD LNDYKVILVN DRQDLEEQLG
ETATLIGGRV NVIETRQDLR KHLATESSDI NMVMVHKFQE HKQTLTNTVA EALGTYLAMP
SGKTFGVVNT SDRIILMIDE AHRTQSSDLG ENLFEAFPNA TRIAFTGTPL LTERHGERKT
HKRFGEYIDT YRLLDAVNDG ATLQILYEGK TADSALTEKH AFDQAFEDLF RDRSEEELLA
IKKKYGATGD ILEAENRINA IARDLVRHYI DNILPNGFKA QVVCHSKLAC IRYQAGIEAA
IAERIEQEQV KTAPDADLLR RLRFLKTAVV VSSDGTNEAA FITQARKQAA RMGAVENFCR
GFDLDDPDKE YSGIAFLIVC DMLLTGFDAP IEQVMYIDKK LREHTLLQAI ARTNRVKKGK
QRGYVVDYIG LANHLTDALT LYAASDELQE LHDGMQNITS ELPVLEERYQ RLLQHFTALG
VRSIGAFVTG TLSGLEADAA VVHEAVKALK DEKLRADFEV YLKKFLMSMD IILPHPSAQP
YRVPAKRFGY ILQVTKERYK DASLDLSGAG EKVKALINDH LISLGINPKV EPVELLAEDF
LEKLAAHSGK NVEAKASEME HAIRKHCTVH HDEDPAFFKS LSEKVDALIE KHQDEWDLLV
EKLAELRSEA VAGRQKGEEG MSKEATTFYA HIIQVGFAGG VVAGGDKDKF KALMEATVDL
LQETIGSIDF WQNPDKQKRI RGLLKTEISK TGIDELKQNR ERVAIEIMKL AKNRHDELTR
VVRAGIA