Gene Pmen_0516 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPmen_0516 
Symbol 
ID5108140 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas mendocina ymp 
KingdomBacteria 
Replicon accessionNC_009439 
Strand
Start bp554215 
End bp555009 
Gene Length795 bp 
Protein Length264 aa 
Translation table11 
GC content65% 
IMG OID640501729 
ProductSec-independent protein translocase, TatC subunit 
Protein accessionYP_001186018 
Protein GI146305553 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG0805] Sec-independent protein secretion pathway component TatC 
TIGRFAM ID[TIGR00945] Twin arginine targeting (Tat) protein translocase TatC 


Plasmid Coverage information

Num covering plasmid clones27 
Plasmid unclonability p-value0.852209 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones53 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCAAAC TGCCGGACGC CGACCAGGAA ATGCCCCTGG TCTCGCACCT GACCGAACTG 
CGCACGCGCC TGCTGCGTTG CGTGGTGATC ATCCTGCTGA TCTTCGCCGG CCTGTTCTAT
TTCGCCCAGG ACATCTACGC CCTGGTCGCC GCACCGCTGC GCGCCTATCT GCCGGACGGC
GCGACGATGA TCGCCACCGG CGTCGCCTCG CCCTTCCTCA CGCCGTTCAA GCTGACACTG
ATGTGCGCGC TGTTTCTCGG CATGCCGGTG ATCCTGCACC AGGCCTGGGG CTTCATCGCG
CCGGGGCTGT ACACCCATGA ACGGCGCATC GCCGTGCCGC TGCTGATCTC CAGCATCTTC
CTGTTCTATG CCGGTATGGC CTTCGCCTAC TTCGTGGTCT TTCCCATCAT GTTCGGCTTC
TTCGCCAGCG TGACCCCGGA AGGCGTGGCG ATGATGACCG ACATCGGTCA GTACCTGGAC
TTCGTCCTGA CCCTGTTCTT CGCCTTCGGC GTGGCCTTCG AGATTCCCAT CGCCACCTTC
CTGCTGATCT GGGTCGGCAT CGTCGACGTG GCCACCCTGC GCAAGAGCCG CCCCTACGTG
ATCGTCGGCT GCTTCGCCGT GGGCATGCTG CTGACGCCGC CGGACGTGTT CTCGCAGACC
CTGCTGGCCG TACCGATGTG GCTGCTGTTC GAAGCCGGCG TGCTGGCCGG CGCCCTGGTC
AAGCGCAAGC GCGACGAGGA AAAGGCCGAG GAAGAGGCCA AGCCCGAAGA CCAGCCGCCC
GCGCCACTGT CGTGA
 
Protein sequence
MSKLPDADQE MPLVSHLTEL RTRLLRCVVI ILLIFAGLFY FAQDIYALVA APLRAYLPDG 
ATMIATGVAS PFLTPFKLTL MCALFLGMPV ILHQAWGFIA PGLYTHERRI AVPLLISSIF
LFYAGMAFAY FVVFPIMFGF FASVTPEGVA MMTDIGQYLD FVLTLFFAFG VAFEIPIATF
LLIWVGIVDV ATLRKSRPYV IVGCFAVGML LTPPDVFSQT LLAVPMWLLF EAGVLAGALV
KRKRDEEKAE EEAKPEDQPP APLS